View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_17 (Length: 648)
Name: NF9011_low_17
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 27588817 - 27589069
Alignment:
| Q |
18 |
tgggatacatattaaaccgtaattaatattaaataatttatgattaatatttgttgtggacatggatgaattagacatgctatcagattaaaaagaaagg |
117 |
Q |
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| T |
27588817 |
tgggatacatattaaaccgtaattaatattaaataatttatgattaatatttgttgtggacatggatgaattagacatgctatcagattaaaaagaaagg |
27588916 |
T |
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| Q |
118 |
aaaaatatttgaaaattgaatgatagctatatattgcatttgtgaatgcagatctcgatgaaaggaaatgtatgggttccttgccgtttcccatcttctt |
217 |
Q |
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| T |
27588917 |
aaaaatatttgaaaattgaatgatagctatatattgcatttgtgaatgcagatctcgatgaaaggaaatgtatgggttccttgccgtttcccatcttctt |
27589016 |
T |
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| Q |
218 |
aatgaattggtcactacaaaatttaatttactccattcatttccattactaaa |
270 |
Q |
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| T |
27589017 |
aatgaattggtcactacaaaatttaatttactccattcatttccattactaaa |
27589069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 369 - 632
Target Start/End: Original strand, 27589176 - 27589448
Alignment:
| Q |
369 |
ttgtcactaat--agggacaaatattcataatttgcgattttgatatatcataaagtactaaatagcgttgccttgttcaagtgaaaatgatgtgtgtat |
466 |
Q |
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| T |
27589176 |
ttgtcactaatgaagggacaaatattcataatttgcgattttgatatatcataaagtactaaatagcgttgccttgttcaagtgaaaatgatgtgtgtat |
27589275 |
T |
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| Q |
467 |
taaaggacttgtcccactctagaaaggaccacaactgaagtctaagcctgcaaaccattagttttcaatctttgtggtccatatatctgtttcaaaggaa |
566 |
Q |
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| T |
27589276 |
taaaggacttgtcccactctagaaaggaccacagctgaagtctaagcctgcaaaccattagttttcaatctttgtggtccatatatctgtttcaaaggaa |
27589375 |
T |
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| Q |
567 |
gatttacccttatgctactatatgtttg-------ttagaatggatgattttgttttgagttacagttaagag |
632 |
Q |
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| T |
27589376 |
gatttacccttatgctactatatgtttgttagaacttagaatggatgattttgttttgagttacagttaagag |
27589448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 27589068 - 27589122
Alignment:
| Q |
317 |
aaaattaatatttaataaatcaacaatttagttaatttctcttttatgtcccttg |
371 |
Q |
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| T |
27589068 |
aaaattaatatttaataaatcaacaatttagttaatttctcttttatgtcccttg |
27589122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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