View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_20 (Length: 647)
Name: NF9011_low_20
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Complemental strand, 20101410 - 20100947
Alignment:
| Q |
18 |
ataactttttggagaaaagctattttgatcatttttgacaataaaactaaagagccagaacaaccacaacaacatagaacatgataaaaaa-gtttggga |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20101410 |
ataactttttggagaaaagctattttgatcatttttgacaataaaactaaagagccagaacaaccacaacaacatagaacatgataaaaaaagtttggga |
20101311 |
T |
|
| Q |
117 |
attaaaactggttnnnnnnnttaattaagctggtttttca----gtcatagtattaaaacaaatttgtattaaaacttgtttttggctacgatatcgaac |
212 |
Q |
| |
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|||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20101310 |
attaaaactgcttaaaaaaattaattaagctggtttttcacatagtcatagtattaaaacaaatttgtattaaaacttgtttttggctacgatatcgaac |
20101211 |
T |
|
| Q |
213 |
acaatgatttttaacaaaatctgaggataaattggatagaaaatacaacatctaaattagggttgttcattttaaccagctaagcctatgtttggctcag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20101210 |
acaatgatttttaacaaaatctgaggataaattggatagaaaatacaacatctaaattagggttgttcattttaaccagctaagcctatgtttggctcag |
20101111 |
T |
|
| Q |
313 |
cggtacctttttcacatctgcccaaaaccacggcataaattcacgtttctagtgaagctacaaatagcagcttctccaaatcacatcaaaaaggcatcta |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20101110 |
cggtacctttttcacatctgcccaaaaccacggcataaattcacgtttctagtgaagctacaaatagcagcttctccaaatcacatcaaaaaggcatcta |
20101011 |
T |
|
| Q |
413 |
aacgtaaggcagtggcagcaaaaagctataccaaacacatactaagtggtttatccaaaatcat |
476 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20101010 |
aacgtgaggcagtggcagcaaaaagctataccaaacacatactaagtggtttatccaaaatcat |
20100947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 485 - 634
Target Start/End: Complemental strand, 20100921 - 20100772
Alignment:
| Q |
485 |
ccaaataattttattttgttatttcaaaccggttcattttctattatggatggatgacaataatctcaaatccctaatctcaaattgatttgattctccc |
584 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20100921 |
ccaaataattttattttgttatttcaaaccggttcattttctattatggatggatgacaataatctcaaatccctaatctcaaattgatttgattctccc |
20100822 |
T |
|
| Q |
585 |
ttttcgctcatgattctcattcttcatttgcaacaactctttagtattat |
634 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20100821 |
ttttcgctcatgattctcattcttcatttgcaacaactctttagtattat |
20100772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 309 - 455
Target Start/End: Complemental strand, 19783116 - 19782970
Alignment:
| Q |
309 |
tcagcggtacctttttcacatctgcccaaaaccacggcataaattcacgtttctagtgaagctacaaatagcagcttctccaaatcacatcaaaaaggca |
408 |
Q |
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||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
19783116 |
tcagcggtacctttttcacatctgcccaaaaccaccgtacaaattcacgtttctagtgaagctacacatagcagcttctccaaatcacatcaaaaaggca |
19783017 |
T |
|
| Q |
409 |
tctaaacgtaaggcagtggcagcaaaaagctataccaaacacatact |
455 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
19783016 |
tctaaacgtgaggcagtggcagcaaaaagctataccaaacacatact |
19782970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 42351845 - 42351745
Alignment:
| Q |
296 |
gcctatgtttggctcagcggtacctttttcacatctgcccaaaaccacggcataaattcacgtttctagtgaagctacaaatagcagcttctccaaatca |
395 |
Q |
| |
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|||||||||||| | |||||||| |||||||||| |||||| ||||||| ||||||||||| |||||||||||| |||| |||| | ||||||| |
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| T |
42351845 |
gcctatgtttggttgtgcggtaccattttcacatcaagccaaaatcacggcaggaattcacgtttgcagtgaagctacatatagttgctttttcaaatca |
42351746 |
T |
|
| Q |
396 |
c |
396 |
Q |
| |
|
| |
|
|
| T |
42351745 |
c |
42351745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 8e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 293 - 457
Target Start/End: Original strand, 28781291 - 28781454
Alignment:
| Q |
293 |
taagcctatgtttggctcagcggtacctttttcacatctgcccaaaaccacggcataaattcacgtttctagtgaagctacaaatagcagcttctccaaa |
392 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28781291 |
taagcctatgtttggctcagccgtacctttttcacatctgcccaaaaccacggcacaaattcacgtttctagtgaagctaaaaatagcagcttctccaaa |
28781390 |
T |
|
| Q |
393 |
tcacatcaaaaaggcatctaaacgtaaggcagtggcagcaaaaagctataccaaacacatactaa |
457 |
Q |
| |
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||||||| ||||||||||||||| | |||||||||||||||||||||||||||| |||||||||| |
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|
| T |
28781391 |
tcacatc-aaaaggcatctaaacatgaggcagtggcagcaaaaagctataccaaccacatactaa |
28781454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 293 - 456
Target Start/End: Original strand, 24914845 - 24915007
Alignment:
| Q |
293 |
taagcctatgtttggctcagcggtacctttttcacatctgcccaaaaccacggcataaattcacgtttctagtgaagctacaaatagcagcttctccaaa |
392 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||| |||||||||||||| |||||||||||| |||||||| ||||||||| |||||||||||| |
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| T |
24914845 |
taagcctatgtttggctttacggcacctttttcacatctggccaaaaccacggcacaaattcacgtttatagtgaagttacaaatagtagcttctccaaa |
24914944 |
T |
|
| Q |
393 |
tcacatcaaaaaggcatctaaacgtaaggcagtggcagcaaaaagctataccaaacacatacta |
456 |
Q |
| |
|
||| ||||||| ||||| ||| || |||||| ||||||||||||||| |||||| |||||||| |
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|
| T |
24914945 |
tcaagtcaaaaa-gcatccaaatgtgaggcagcggcagcaaaaagctaaaccaaagacatacta |
24915007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 417
Target Start/End: Complemental strand, 8382392 - 8382268
Alignment:
| Q |
293 |
taagcctatgtttggctcagcggtacctttttcacatctgcccaaaaccacggcataaattcacgtttctagtgaagctacaaatagcagcttctccaaa |
392 |
Q |
| |
|
||||||||||||||||| ||||| || ||| |||||| |||||| ||||||| || |||||||| ||||||||||| |||| ||||| ||| || |
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| T |
8382392 |
taagcctatgtttggctgtgcggtgccatttccacatcaagccaaaatcacggcaggaactcacgtttgcagtgaagctacgtatagtagcttttccgaa |
8382293 |
T |
|
| Q |
393 |
tcacatcaaaaaggcatctaaacgt |
417 |
Q |
| |
|
|||| ||||||||| || |||||| |
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|
| T |
8382292 |
tcacggcaaaaaggcttcaaaacgt |
8382268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 295 - 453
Target Start/End: Complemental strand, 454305 - 454147
Alignment:
| Q |
295 |
agcctatgtttggctcagcggtacctttttcacatctgcccaaaaccacggcataaattcacgtttctagtgaagctacaaatagcagcttctccaaatc |
394 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||| |||||||||||| | |||| || ||||||||||||||||||||||| || ||||||||||| |
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| T |
454305 |
agcctatgttcagctcagtggcacctttttcacatctagccaaaaccacggtagaaatccatgtttctagtgaagctacaaatagtagtttctccaaatc |
454206 |
T |
|
| Q |
395 |
acatcaaaaaggcatctaaacgtaaggcagtggcagcaaaaagctataccaaacacata |
453 |
Q |
| |
|
|| ||||||||||||| ||| || |||||| | | | ||||||||| |||||||||||| |
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|
| T |
454205 |
acgtcaaaaaggcatcaaaatgtgaggcagcgactgaaaaaagctaaaccaaacacata |
454147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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