View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_23 (Length: 602)
Name: NF9011_low_23
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_23 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 276 - 602
Target Start/End: Complemental strand, 43195949 - 43195628
Alignment:
| Q |
276 |
atagtgcgaagaaaaaataagtgaaaaattattataaacatggagggttacattgagnnnnnnnacaccataacaattctagtctttggggagcattggg |
375 |
Q |
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| T |
43195949 |
atagtgcgaagaaaaaataagcgaaaaattattataaacatggagggttacattgagtttttttacaccataacaattctagtctttggggtgcattggg |
43195850 |
T |
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| Q |
376 |
gacttgaatatttgtgtctttggtagagtttccaattttttgtgcaaaagtgtggggaagggtttataatttttcctttggataatttgagctaactatt |
475 |
Q |
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| T |
43195849 |
gacttgaatatttgtgtctttggtagagtttccaattttttgtgcaaaagtgtggggaagggtttataatttttcctttggataatttaagctaactatt |
43195750 |
T |
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| Q |
476 |
aaggtagacattatcccgtnnnnnnnnnnnnnnnnnnttaaggtagacttcatgaataataaagtagacaaagccacaaaactatttacatattactgcc |
575 |
Q |
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| T |
43195749 |
aaggtagacattatcccct-----aaaaaaaaaaaatttaaggtagacttcatgactaataaagtagacaaagtcacaaaactatttacatattactccc |
43195655 |
T |
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| Q |
576 |
caacaaaattttttcgctaaggaacac |
602 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
43195654 |
caacaagattttttcgctaaggaacac |
43195628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 43196054 - 43195944
Alignment:
| Q |
141 |
aggtaccaggaatagtgtttccaatccatacaaacgtttagtttagagaatgtcattgacttattagtagaaacatgtcagatcttagatccacaagtca |
240 |
Q |
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| T |
43196054 |
aggtaccaggaatagtgtttccaatccatacaaacgtttagtttagagaatgtcattgacttattagtagaaacatgtcagatcttagatccacaagtca |
43195955 |
T |
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| Q |
241 |
atggaatagtg |
251 |
Q |
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| T |
43195954 |
atggaatagtg |
43195944 |
T |
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