View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_27 (Length: 568)
Name: NF9011_low_27
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 412
Target Start/End: Complemental strand, 6028069 - 6027674
Alignment:
| Q |
17 |
aagaacttactatgctttccaataacatcataacaaggatggctttgaaaagaaggtgtagtgatgttgaaggtgaaggacatcaattgattgagcttgt |
116 |
Q |
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| T |
6028069 |
aagaacttactatgctttctaataacatcataacaaggatggctttgaaaagaaggtgcagtgatgttgaaggtgaaggacatcaattgattgagcttgt |
6027970 |
T |
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| Q |
117 |
gaaagaaatggctgtgttaggtggtaagttcaatttgggagatatgttatggtttgttaagaagcttgatttgcaagggtttggtaaaaggctagagaat |
216 |
Q |
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| T |
6027969 |
gaaagaaatggctgtgttaggtggtaagttcaatttgggagatatgttatggtttgttaagaagcttgatttgcaagggtttggtaaaaggctagagaat |
6027870 |
T |
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| Q |
217 |
cttagaaataggtatgatgttataatagagaggatcatgaaggaacatgaagatacaaagaagaaaaacaaggaggaaataaatagtaatggaattgaaa |
316 |
Q |
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| T |
6027869 |
cttagaaataggtatgatgttataatagagaggatcatgaaggaacatgaagatacaaagaagaaaaacaaggaggaaataaatagtaatggaattgaaa |
6027770 |
T |
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| Q |
317 |
cagtgagtgatttgcttgatattttacttgatatctatgctgatgaaaactcagaggttagattaactagagaaaatatcaaggccttcatcatgg |
412 |
Q |
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| T |
6027769 |
cagtgagtgatttgcttgatattttacttgatatctatgctgatgaaaactcagaggttagattaactagagaaaatatcaaggccttcatcatgg |
6027674 |
T |
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