View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9011_low_29 (Length: 553)

Name: NF9011_low_29
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9011_low_29
NF9011_low_29
[»] chr7 (1 HSPs)
chr7 (18-538)||(34839924-34840444)
[»] chr2 (1 HSPs)
chr2 (156-377)||(11733435-11733656)
[»] chr4 (4 HSPs)
chr4 (156-346)||(38178362-38178552)
chr4 (192-388)||(5935394-5935590)
chr4 (180-395)||(5921922-5922137)
chr4 (192-395)||(5531903-5532106)
[»] chr8 (2 HSPs)
chr8 (151-397)||(45319608-45319854)
chr8 (165-403)||(40916985-40917223)
[»] chr1 (3 HSPs)
chr1 (183-429)||(45453104-45453350)
chr1 (231-291)||(3738857-3738917)
chr1 (384-526)||(3738932-3739074)
[»] chr3 (1 HSPs)
chr3 (177-373)||(53146718-53146914)


Alignment Details
Target: chr7 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Original strand, 34839924 - 34840444
Alignment:
Q  18 tgttcgtaaagaagctgagaattgcgattgtcttcaaggtacaatctatttcttgtgcgatttagtacacttgtggaaatcttgattctgttatggcggt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34839924 tgttcgtaaagaagctgagaattgcgattgtcttcaaggtacaatctattacttgtgcgatttagtacacttgtggaaatcttgattctgttatggcggt 34840023  T
Q  118 tactaattttgcattttgtgattttgcggtttttagggtttcaggtgtgtcattcgttgggaggaggtacgggatctggaatgggaactttgttgatttc 217  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34840024 tactaattttgtattttgtgattttgcggtttttagggtttcaggtgtgtcattcgttgggaggaggaacgggatctggaatgggaactttgttgatttc 34840123  T
Q  218 gaagattagagaggaatatcccgataggatgatgttgacgttttcggtgtttccttctccgaaggtttctgatactgttgttgagccttataatgctact 317  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34840124 gaagattagagaggaatatcctgataggatgatgttgacgttttcggtgtttccttctccgaaggtttctgatactgttgttgagccttataatgctact 34840223  T
Q  318 ctttctgttcatcagttggttgagaatgctgacgagtgtatggtgcttgataatgaggctttgtacgatatctgcttcagaacacttaaattgactactc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34840224 ctttctgttcatcagttggttgagaatgctgacgagtgtatggtgcttgataatgaggctttgtacgatatctgcttcagaacacttaaattgactactc 34840323  T
Q  418 ctagctgtgagtattgtttgaattttaagtgatctagatctattatttgtttttcatcactaagctatattagtaacatgttaattgttcattgatttgt 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34840324 ctagctgtgagtattgtttgaattttaagtgatctagatctattatttttttttcatcactaagctagattagtaacatgttaattgttcattgatttgt 34840423  T
Q  518 ttgatttgaagagtgattagt 538  Q
    |||||||||||||||||||||    
T  34840424 ttgatttgaagagtgattagt 34840444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 156 - 377
Target Start/End: Complemental strand, 11733656 - 11733435
Alignment:
Q  156 tttcaggtgtgtcattcgttgggaggaggtacgggatctggaatgggaactttgttgatttcgaagattagagaggaatatcccgataggatgatgttga 255  Q
    ||||| ||||||||||| |||||||| || ||||| || || ||||||||  | ||||||||||||||| |||| |||||||| ||| | ||||||||||    
T  11733656 tttcaagtgtgtcattcattgggaggtggcacgggttcaggcatgggaacacttttgatttcgaagattcgagaagaatatccggatcgtatgatgttga 11733557  T
Q  256 cgttttcggtgtttccttctccgaaggtttctgatactgttgttgagccttataatgctactctttctgttcatcagttggttgagaatgctgacgagtg 355  Q
    ||||||||||||||||||| || ||||| |||||||| ||||| || || |||||||| || ||||||||||||||| | ||||||||||| || || ||    
T  11733556 cgttttcggtgtttccttcacctaaggtgtctgatacggttgtagaaccgtataatgccacgctttctgttcatcagcttgttgagaatgcggatgaatg 11733457  T
Q  356 tatggtgcttgataatgaggct 377  Q
     |||||| | ||||| ||||||    
T  11733456 catggtgttggataacgaggct 11733435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 156 - 346
Target Start/End: Complemental strand, 38178552 - 38178362
Alignment:
Q  156 tttcaggtgtgtcattcgttgggaggaggtacgggatctggaatgggaactttgttgatttcgaagattagagaggaatatcccgataggatgatgttga 255  Q
    ||||| ||||||||||| |||||||| || || || ||||||||||||||  |  | |||||||||||||| || || ||||| ||| | ||||||||||    
T  38178552 tttcaagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgatgttga 38178453  T
Q  256 cgttttcggtgtttccttctccgaaggtttctgatactgttgttgagccttataatgctactctttctgttcatcagttggttgagaatgc 346  Q
    ||||||| ||||||||||| || |||||||| ||||| ||||| |||||||| ||||| || |||||||| |||||| | ||||| |||||    
T  38178452 cgttttctgtgtttccttcacctaaggtttcagatacagttgtggagccttacaatgcaaccctttctgtgcatcagcttgttgaaaatgc 38178362  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 192 - 388
Target Start/End: Complemental strand, 5935590 - 5935394
Alignment:
Q  192 tctggaatgggaactttgttgatttcgaagattagagaggaatatcccgataggatgatgttgacgttttcggtgtttccttctccgaaggtttctgata 291  Q
    ||||||||||| ||  | |||||||| ||||| || || ||||| || |||||||||||| | || || || || || |||||||| ||||||||||| |    
T  5935590 tctggaatgggtacccttttgatttcaaagatcagggaagaatacccagataggatgatgcttactttctctgttttcccttctcctaaggtttctgaca 5935491  T
Q  292 ctgttgttgagccttataatgctactctttctgttcatcagttggttgagaatgctgacgagtgtatggtgcttgataatgaggctttgtacgatat 388  Q
    |||| ||||| || || |||||||| || |||||||| ||| | ||||| || || || || |||||||| ||||||||||| || ||||| |||||    
T  5935490 ctgtggttgaaccctacaatgctaccctatctgttcaccagcttgttgaaaacgcagatgaatgtatggttcttgataatgaagccttgtatgatat 5935394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 180 - 395
Target Start/End: Complemental strand, 5922137 - 5921922
Alignment:
Q  180 ggaggtacgggatctggaatgggaactttgttgatttcgaagattagagaggaatatcccgataggatgatgttgacgttttcggtgtttccttctccga 279  Q
    ||||| || |||||||||||||||||  |  | ||||| ||||| || || ||||| || || ||||||||| | || || || || || |||||||| |    
T  5922137 ggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgatgcttactttctctgttttcccttctccta 5922038  T
Q  280 aggtttctgatactgttgttgagccttataatgctactctttctgttcatcagttggttgagaatgctgacgagtgtatggtgcttgataatgaggcttt 379  Q
    |||||||||| ||||| ||||| || || ||||||||| | |||||||| ||| | ||||| || || || || |||||||| ||||||||||| || ||    
T  5922037 aggtttctgacactgtggttgaaccctacaatgctactttatctgttcaccagcttgttgaaaacgcagatgaatgtatggttcttgataatgaagcctt 5921938  T
Q  380 gtacgatatctgcttc 395  Q
    ||| ||||| ||||||    
T  5921937 gtatgatatttgcttc 5921922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 395
Target Start/End: Original strand, 5531903 - 5532106
Alignment:
Q  192 tctggaatgggaactttgttgatttcgaagattagagaggaatatcccgataggatgatgttgacgttttcggtgtttccttctccgaaggtttctgata 291  Q
    ||||||||||||||| |  ||||||| ||||| || || ||||| || || ||||||||| | || || || || || |||||||| ||||||||||| |    
T  5531903 tctggaatgggaactcttctgatttcaaagatcagggaagaatacccagacaggatgatgcttactttctctgttttcccttctcctaaggtttctgaca 5532002  T
Q  292 ctgttgttgagccttataatgctactctttctgttcatcagttggttgagaatgctgacgagtgtatggtgcttgataatgaggctttgtacgatatctg 391  Q
    |||| ||||| || || |||||||| || |||||||| ||| | ||||| ||||| || |||   ||||| ||||| ||||| || ||||| || || ||    
T  5532003 ctgtggttgaaccctacaatgctaccctctctgttcaccagcttgttgaaaatgcagatgaggtcatggttcttgacaatgaagccttgtatgacatttg 5532102  T
Q  392 cttc 395  Q
    ||||    
T  5532103 cttc 5532106  T

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Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 151 - 397
Target Start/End: Original strand, 45319608 - 45319854
Alignment:
Q  151 tagggtttcaggtgtgtcattcgttgggaggaggtacgggatctggaatgggaactttgttgatttcgaagattagagaggaatatcccgataggatgat 250  Q
    |||| ||||| ||||| || || ||||||||||| ||||| ||||||||||||||| |  | ||||| ||||| ||||| ||||| || ||| | |||||    
T  45319608 taggatttcaagtgtgccactccttgggaggaggaacgggttctggaatgggaactctactcatttcaaagatcagagaagaataccctgatcgaatgat 45319707  T
Q  251 gttgacgttttcggtgtttccttctccgaaggtttctgatactgttgttgagccttataatgctactctttctgttcatcagttggttgagaatgctgac 350  Q
    | | || || || || ||||| ||||| ||||| || || || |||||||||||||| ||||| || ||||||||||| || ||||| |||||||| ||     
T  45319708 gctcactttctctgtctttccatctccaaaggtgtcagacacagttgttgagccttacaatgcaacactttctgttcaccaattggtggagaatgccgat 45319807  T
Q  351 gagtgtatggtgcttgataatgaggctttgtacgatatctgcttcag 397  Q
    ||||||||||| ||||||||||| ||  | || || |||||||||||    
T  45319808 gagtgtatggtccttgataatgaagcactctatgacatctgcttcag 45319854  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 165 - 403
Target Start/End: Complemental strand, 40917223 - 40916985
Alignment:
Q  165 tgtcattcgttgggaggaggtacgggatctggaatgggaactttgttgatttcgaagattagagaggaatatcccgataggatgatgttgacgttttcgg 264  Q
    ||||||||| | ||||| || || ||||| |||||||| || ||| | ||||| ||||| ||||| || ||||| || || ||||||||||| || || |    
T  40917223 tgtcattcgcttggaggtggaactggatcaggaatgggtaccttgctcatttccaagatcagagaagagtatccagacagaatgatgttgactttctcag 40917124  T
Q  265 tgtttccttctccgaaggtttctgatactgttgttgagccttataatgctactctttctgttcatcagttggttgagaatgctgacgagtgtatggtgct 364  Q
    |||| ||||| || |||||||||||||| || || || || || ||||| ||||| |||||||||||  | ||||| ||||| ||||| || ||||| ||    
T  40917123 tgttcccttcaccaaaggtttctgataccgtggtggaaccctacaatgcaactctctctgttcatcaactagttgaaaatgcagacgaatgcatggttct 40917024  T
Q  365 tgataatgaggctttgtacgatatctgcttcagaacact 403  Q
    ||||||||||||  | || |||||||| |||||||||||    
T  40917023 tgataatgaggcactctatgatatctgtttcagaacact 40916985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 183 - 429
Target Start/End: Complemental strand, 45453350 - 45453104
Alignment:
Q  183 ggtacgggatctggaatgggaactttgttgatttcgaagattagagaggaatatcccgataggatgatgttgacgttttcggtgtttccttctccgaagg 282  Q
    ||||| || ||||||||||||||  | |||||||| ||||| || |||||||| || ||| | |||||| | || || || ||||| || ||||| ||||    
T  45453350 ggtactggttctggaatgggaacacttttgatttctaagatcagggaggaataccctgatcgaatgatgcttactttctctgtgttcccatctcctaagg 45453251  T
Q  283 tttctgatactgttgttgagccttataatgctactctttctgttcatcagttggttgagaatgctgacgagtgtatggtgcttgataatgaggctttgta 382  Q
    | ||||| ||||||||||| ||||| |||||||| || ||||| || ||  | |||||||||||||| || || ||||| || |||||||| ||| | ||    
T  45453250 tatctgacactgttgttgaaccttacaatgctacactctctgtccaccaacttgttgagaatgctgatgaatgcatggttctggataatgaagctctcta 45453151  T
Q  383 cgatatctgcttcagaacacttaaattgactactcctagctgtgagt 429  Q
     ||||| |||||| | || |||||| | |||||||| ||||||||||    
T  45453150 tgatatttgcttccgcacccttaaactcactactccaagctgtgagt 45453104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 3738857 - 3738917
Alignment:
Q  231 gaatatcccgataggatgatgttgacgttttcggtgtttccttctccgaaggtttctgata 291  Q
    |||||||| ||||||||| |||||||||||||| |||||||||| ||||||||||||||||    
T  3738857 gaatatcctgataggatgttgttgacgttttcgatgtttccttcaccgaaggtttctgata 3738917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 526
Target Start/End: Original strand, 3738932 - 3739074
Alignment:
Q  384 gatatctgcttcagaacacttaaattgactactcctagctgtgagtattgtttgaattttaagtgatctagatctattatttgtttttcatcactaagct 483  Q
    ||||| ||||||||  | ||||||||||||||| ||||||||||||||| ||    ||    |||||||||||||  | || ||| |||||||||| | |    
T  3738932 gatatttgcttcagggctcttaaattgactactactagctgtgagtattcttctctttggtcgtgatctagatctcattttcgttgttcatcactagggt 3739031  T
Q  484 atattagtaacatgttaattgttcattgatttgtttgatttga 526  Q
    |||| ||||||||||||||||||  |||||||||||| |||||    
T  3739032 atatcagtaacatgttaattgttagttgatttgtttggtttga 3739074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 373
Target Start/End: Complemental strand, 53146914 - 53146718
Alignment:
Q  177 ggaggaggtacgggatctggaatgggaactttgttgatttcgaagattagagaggaatatcccgataggatgatgttgacgttttcggtgtttccttctc 276  Q
    |||||||| ||||| ||||| ||||||||  | ||||| || |||||||| ||||||||||| || || |||||| | || || || || || || ||||    
T  53146914 ggaggaggcacgggttctggcatgggaacactattgatatcaaagattagggaggaatatccagacagaatgatgcttactttctctgttttcccatctc 53146815  T
Q  277 cgaaggtttctgatactgttgttgagccttataatgctactctttctgttcatcagttggttgagaatgctgacgagtgtatggtgcttgataatga 373  Q
    | ||||| ||||| || ||||||||||| || ||||| ||  | ||||| || ||  |||| || ||||| || ||||||||||| ||||| |||||    
T  53146814 caaaggtatctgacacagttgttgagccatacaatgccacattatctgtccaccaactggtagaaaatgcagatgagtgtatggttcttgacaatga 53146718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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