View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_30 (Length: 549)
Name: NF9011_low_30
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Complemental strand, 5140072 - 5139542
Alignment:
| Q |
1 |
caacgaacaaaactgtcgccacgtggcgtaacatccccaatttaaccaccatctccaacgacgccgtttcacccaaccaccttttcaacaactccacctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5140072 |
caacgaacaaaactgtcgccacgtggcgtaacatccctaatttaaccaccatctccgacgacgccgtttcacccaaccaccttttcaacaactccacctt |
5139973 |
T |
|
| Q |
101 |
cactttcaccgacgcaaccaccaccattccttccaaattcgccaccgtctccgcctcccaaaccaaaccgaacaacgaattcgccctgacgccggctcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
5139972 |
cactttcaccgacgcaaccaccaccattccttccaaattcgccaccgtctccgcctcccaaaccaaaccgaacaacgaattcgcgcctacgccggctcag |
5139873 |
T |
|
| Q |
201 |
cttcttaaccacccgatcgccgtcgtcgcacttgttcccaaagatgctgcattgtttctcgccggtgctgttgccggagctgctgctaaaaccgttactg |
300 |
Q |
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| T |
5139872 |
cttcttaaccacccgatcgccgtcgtcgcacttgttcccaaagatgctgcattgtttctcgccggtgctgttgccggagctgctgctaaaaccgttactg |
5139773 |
T |
|
| Q |
301 |
ctccactcgatcgaatcaagcttctcatgcaggtaacggcattgtttttctctttctgttttgagagattttaggttctgtctgtatgtttatgaaaatg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| |
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| T |
5139772 |
ctccactcgatcgaatcaagcttctcatgcaggtaacggcattgtttttctctttctgttttgagagattttaggctccgtccgtatgtttatgaaaatg |
5139673 |
T |
|
| Q |
401 |
acattgtgatttttgcagactcatggagtgcgaattggacaagaaagtgccaagaagacaattggttttattgaggtatcataatataagagtttattga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5139672 |
acattgtgatttttgcagactcatggagtgcgaattagacaagaaagtgccaagaagacaattggttttattgaggtatcataatataagagtttattga |
5139573 |
T |
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| Q |
501 |
tatacaccgtcggtgtaaaagagttacacat |
531 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5139572 |
tatacaccgtcggtgtaaaagagttacacat |
5139542 |
T |
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