View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_34 (Length: 514)
Name: NF9011_low_34
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_34 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 171 - 506
Target Start/End: Complemental strand, 21626780 - 21626445
Alignment:
| Q |
171 |
tgcatgtactatatatatagttaaaagaagaatattggtggaatgggaaccaacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttt |
270 |
Q |
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| T |
21626780 |
tgcatgtactatatatatagttaaaagaagaatattggtggaatgggaaccaacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttt |
21626681 |
T |
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| Q |
271 |
tctttgatgcatgcctgctactgccttcacttctcccactgtctctccagtgatctgcacaaacccactcacacccaaaagaacaatccaaattattaca |
370 |
Q |
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| T |
21626680 |
tctttgatgcatgcctgctactgccttcacttctcccactgtctctccagtgatctgcacaaacccactcacacccaaaagaacaatccaaattattact |
21626581 |
T |
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| Q |
371 |
cctttttgtgagtgattcgtgcaacaatgcatggatgcaaaaatagtaatgatgagtgcttcagaagtgggctcaaaggagaaaaacaacnnnnnnnntg |
470 |
Q |
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| T |
21626580 |
cctttttgtgagtgattcgtgcaacaatgcatggatgcaaaaatagtaatgatgagtgcttcagaagtgggctcaaaggagaaaaacaacaaaaaaaatg |
21626481 |
T |
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| Q |
471 |
tacaaacccatgttttaaatacttgatgtgatgtcc |
506 |
Q |
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| T |
21626480 |
tacaaacccatgttttaaatacttgatgtgaggtcc |
21626445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 21626938 - 21626812
Alignment:
| Q |
14 |
tatgtattgtccctgttaactgagctaatctgaattgtaccagaactttacagtaaaaacataacaacaacgagtgtacaactttaaatt-aattaagtg |
112 |
Q |
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| T |
21626938 |
tatgtattgtccctattaactgagttaatctgaattgtaccagaatttcacagtaaaaacataacaacaacgagtgtacaactttaaattaaattaagtg |
21626839 |
T |
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| Q |
113 |
atccttgatttagtgttgccaataact |
139 |
Q |
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| T |
21626838 |
atccttgatttagtgttgccaataact |
21626812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 222 - 309
Target Start/End: Original strand, 28270720 - 28270807
Alignment:
| Q |
222 |
aacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcatgcctgctactgccttcacttctcccac |
309 |
Q |
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| T |
28270720 |
aacctggtaaggcaataaaagcatctgaatgcttagccatctctgccttcctttgatgcatatctgctacagcttttacttctcccac |
28270807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 222 - 321
Target Start/End: Complemental strand, 77801 - 77702
Alignment:
| Q |
222 |
aacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcatgcctgctactgccttcacttctcccactgtctctccagt |
321 |
Q |
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||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||| | || || ||||| |||||||| ||||| || ||||| |
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| T |
77801 |
aacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcatatcagcaacagccttaacttctcctactgtttcaccagt |
77702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 222 - 321
Target Start/End: Original strand, 40888483 - 40888582
Alignment:
| Q |
222 |
aacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcatgcctgctactgccttcacttctcccactgtctctccagt |
321 |
Q |
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| T |
40888483 |
aacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcatatcagcaacagccttaacttctcctactgtttcaccagt |
40888582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 40464572 - 40464674
Alignment:
| Q |
219 |
accaacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcatgcctgctactgccttcacttctcccactgtctctcc |
318 |
Q |
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||||||||||||| || ||||| |||||||||| ||| ||| |||||||| |||||||||||| | |||||||| ||||||||||| ||||| || || |
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| T |
40464572 |
accaacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttctcctactgtttcacc |
40464671 |
T |
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| Q |
319 |
agt |
321 |
Q |
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||| |
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| T |
40464672 |
agt |
40464674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 14904788 - 14904728
Alignment:
| Q |
222 |
aacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcat |
282 |
Q |
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||||||||||||||||||||||||| |||||| ||||| ||||||| || |||| |||||| |
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| T |
14904788 |
aacctggtaaggcaataaaagcatcggaatgcctagccgtctcagcattccttttatgcat |
14904728 |
T |
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