View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_36 (Length: 503)
Name: NF9011_low_36
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 34 - 281
Target Start/End: Original strand, 13445690 - 13445937
Alignment:
| Q |
34 |
gggtggaataaagggtaagactaatatttctgggaaattaggatttcaggtcgataaattatgcctcgacaagtttttccattgtgatggtgtcgtgaag |
133 |
Q |
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| T |
13445690 |
gggtggaataaagggtaagactaatatttctgggaaattaggatttcaggtcgataaattatgcctcgacaagtttttccattgtgatggtgtcgtgaag |
13445789 |
T |
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| Q |
134 |
tgtacaagtttaacaaggtggcatcatggttacttcagcaactgacgatactttgagtggatttaaattaaatgtgtaaaatattagtatgtaagttaaa |
233 |
Q |
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| T |
13445790 |
tgtacgagtttaacaaggtggcgtcatggttacttcagcaactgacgatactttgagtggatttaaattaaatgtgtaaaatattagtatgtaagttaaa |
13445889 |
T |
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| Q |
234 |
gttatgaggttcaatatgaattatttagagttgcattattaaaacaac |
281 |
Q |
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| T |
13445890 |
gttgcgaggttcaatatgaattatttagagttacattattaaaacaac |
13445937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 303 - 485
Target Start/End: Original strand, 13446026 - 13446211
Alignment:
| Q |
303 |
acgctattatattttggatgcaaacaaatttttgttaaaaataacatgattcaccataagaccaaaacatagatttttatcataatgcactcaatgctta |
402 |
Q |
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| T |
13446026 |
acgctattatatttaggatgcaaacaaatttttgttaaaaataacatgattcaccataagtacaaaacatagatttttatcataatgcactcgatgctta |
13446125 |
T |
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| Q |
403 |
---nnnnnnnatgctctagaaacttacatcacacaaatacaacagagggaaatctaaaataccattggcaagtgcgtgatacactt |
485 |
Q |
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| T |
13446126 |
ttttttttttatgcactagaaaattacatcacacaaatacaacagagggaaatctaaaataccattggcaagtgcgtgatacactt |
13446211 |
T |
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