View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_38 (Length: 501)
Name: NF9011_low_38
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 21 - 487
Target Start/End: Complemental strand, 5363177 - 5362698
Alignment:
| Q |
21 |
caaggtgtctttgaaatggtctttcatcttttatactactattttcttccatcatcataacttttctctttttgaatggaccc-acaaag---tgagttc |
116 |
Q |
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| T |
5363177 |
caaggtgtctttgaaatggtctttcttcttttatactactattttcttccatcatcataacttttctctttttgaatggaccccacaaaaccctgagttc |
5363078 |
T |
|
| Q |
117 |
ggttcctttacgatcagagattccttacatttcacacagatgcaaagttggcaatcactcgatcaagattgaacggtctaaatttaaattcaaagatcga |
216 |
Q |
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| T |
5363077 |
ggttcctttacgaccagagattccttacatttcacgcagatgcaaagttggcagtcactcgatcaaaattgaacggtctaaatttaaattcaaagatcga |
5362978 |
T |
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| Q |
217 |
at-------------taacggtgtgaatgcaggatctccaactatagatacacaattttttatatttcatagtgatgatagatggatgatatagatggtt |
303 |
Q |
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| T |
5362977 |
atgacaaccaatttttaactgtgtgaatgcaggatctccaactatagatacacaaatttttatatttcatagtgatgatagatg----atatagatggtt |
5362882 |
T |
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| Q |
304 |
gggggactcataaaaggcttctttttcttttcttcccatgaatgcaaattaattgtaagtactagtacattacattattaacaatgaaaaaggaaataat |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5362881 |
gggggactcataaaaggcttctttttcttttcttcccatgaatgcaaattaattgtaagtactggtacattacattattaacaatgaaaaaggaaataat |
5362782 |
T |
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| Q |
404 |
atgaatagtgggttcatcttttaagggtgttgtatatctcgttctggtcagaattgcccccctttcacgttaacatatatacat |
487 |
Q |
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| T |
5362781 |
atgaatagtgggttcatcttttaagggtgttgcatatctcgttctggtcagaattgcccccctttcacgttaacatatatacat |
5362698 |
T |
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