View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_4 (Length: 943)
Name: NF9011_low_4
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 772; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 772; E-Value: 0
Query Start/End: Original strand, 93 - 926
Target Start/End: Complemental strand, 39075251 - 39074413
Alignment:
| Q |
93 |
aaatgtaatcagattagtcccaaaacaaaccatactacaaacagaactgtgtgaccaaaacaagaagtttcttgaaaacaaatatggacctgcgtgtttg |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39075251 |
aaatgtaatcagattagtcccaaaacaaaccatactacaaacagaactgtgtgaccaaaacaagaagtttcttgaaaacaaatatggacctgcgtgtttg |
39075152 |
T |
|
| Q |
193 |
aagtaactcaaacgtacgtcagctacaagacttacgtaaaaaaacaacaaaactgatacattccgtnnnnnnnnngtctcacatgtcacgtaaaacttag |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39075151 |
aagtaactcaaacgtacgtcagctacaagacttacgtaaaaaaacaacaaaactgatacattccgtaaaaaaaaagtctcacatgtcacgtaaaacttag |
39075052 |
T |
|
| Q |
293 |
tagtcaaaactcaaccataaagaaagaaacaaaagccaattttgaaccaaaccaaaccatatgttgtggttcggtctattgatgtcactcaaacatttgt |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39075051 |
tagtcaaaactcaaccataaagaaagaaacaaaagccaattttgaaccaaaccaaaccatatgttgtggttcggtctattgatgtcactcaaacatttgt |
39074952 |
T |
|
| Q |
393 |
ttgatatggcacataggatattcaattattttcttgcttgattttgcaaaccttggagtatctccaacgaaggttccgaacgttgatgaacatttatctt |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39074951 |
ttgatatggcacataggatattcaattattttcttgcttgattttgcaaaccttggagtatctccaacgaaggttccgaacgttgatgaacatttatctt |
39074852 |
T |
|
| Q |
493 |
aatttttcagttcatcggaggaactatgatatggcaaaatgggtagtatagaaattgttgaaacatcttaaattagat-----ccactatcataaaatat |
587 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39074851 |
aatttttcagttcatcggaggaactatgatatggtaaaatgggtagtatagaaattgttgaaacatcttaaattagatgcacagcactatcataaaatat |
39074752 |
T |
|
| Q |
588 |
cattgaatgcaaataaaaaagatatacaagagttgtataattttcattattggagcaaaattgatattagttgcatatgtatgatctggctggcattgag |
687 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39074751 |
cattgaatgcaaataaaaaagatatataagagttgtataattttcattattggagcaaaattgatattagttgcatatgtatgatctggctggcattgag |
39074652 |
T |
|
| Q |
688 |
ggaccatattttagtagagtatgaaattcaaattatgtaccttaaaaaatgatgatcttacatctatgtttttgctaaattttacagagaacctaatgtt |
787 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39074651 |
ggaccattttttagtagagtatgaaactcaaattatgtaccttaaaaaatgatgatcttacatctatgtttttgctaaattttacagagaacctaatgtt |
39074552 |
T |
|
| Q |
788 |
ttaaatgctagtaattgatatcctactatgctagaacattgattatgtcgacttgaacaatctatgtatcagaatttcgaaggaaattgaaattgtaaca |
887 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39074551 |
ttaaatgctagtaattgatatcctactatgctagaacattgattatgtcgacttgaacaatctatgtatcagaatttcgaaggaaattgaaattgtaaca |
39074452 |
T |
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| Q |
888 |
agagtatagccgtataggacggctgatataaataatttg |
926 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
39074451 |
agagtatagccgtataggacggctgatataaataatttg |
39074413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 39075304 - 39075248
Alignment:
| Q |
15 |
tggacatcagaaacatggttcacactataaaatagtcagccatatgaagggacaaat |
71 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39075304 |
tggacatcggaaaaatggttcacactataaaatagtcagccatatgaagggacaaat |
39075248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 472 - 595
Target Start/End: Complemental strand, 43139934 - 43139811
Alignment:
| Q |
472 |
acgttgatgaacatttatcttaatttttcagttcatcggaggaactatgatatggcaaaatgggtagtatagaaattgttgaaacatcttaaattagatc |
571 |
Q |
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||||||||| | || ||||||||||||||| | || |||||||| ||||| | |||||||| ||||||||| ||||||||| ||||||||| |||| |
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| T |
43139934 |
acgttgatggatatgtatcttaatttttcaatcaattggaggaaccatgatgtaccaaaatggatagtatagagattgttgaattatcttaaataagata |
43139835 |
T |
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| Q |
572 |
cactatcataaaatatcattgaat |
595 |
Q |
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| T |
43139834 |
cgttatcataaaataacattgaat |
43139811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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