View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_40 (Length: 493)
Name: NF9011_low_40
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 169 - 479
Target Start/End: Complemental strand, 8025810 - 8025501
Alignment:
| Q |
169 |
tcctcaagtaaattgtttgtttgattaagcagtgacaccgtctgcggtgatata--gttgacaaagaagtattttcttcttgggatacaattacaatttt |
266 |
Q |
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| T |
8025810 |
tcctcaagtaaattgtttgtttgattaagcagtgacactgtctgtggtgatatatagttgacaaagaagtattttcttcttgggatacaattacaatttt |
8025711 |
T |
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| Q |
267 |
tccatattacacaattctagagcttacgagcttat---aagaatgcatagagcagttcgtaattaaatgaagcagagtcacaactctctagttcaattct |
363 |
Q |
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| T |
8025710 |
tccatattacacaattctagtgcttacgagcttattataagaatgcatagagcagttcgtaattaaatgaagcagagtcacaactctctagttc-----t |
8025616 |
T |
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| Q |
364 |
caatatctgacatgagatgggcgaagacaaagggagttatacactccacaaaaatggatttataacaactatcataccaagtcgaaacttctcaaacaac |
463 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8025615 |
caatatctgacatgagatgggcgaagacaaagg-agttatacactccacaaaaatggatttataacaactatcataccaagtcgaaacttctcaaacaac |
8025517 |
T |
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| Q |
464 |
ttgctaatgtatgtat |
479 |
Q |
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|||||||||||||||| |
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| T |
8025516 |
ttgctaatgtatgtat |
8025501 |
T |
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