View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_43 (Length: 487)
Name: NF9011_low_43
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 41795784 - 41795379
Alignment:
| Q |
18 |
aatggaaatgagtcaaccgtcattgggtgagacacaacaaaggttacttccagctatggatgaaatgaacattgatggaaataattatagagagaagaag |
117 |
Q |
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| T |
41795784 |
aatggaaatgagtcaaccgtcattgggtgagacacaacaaaggttacttccagctatggatgaaatgaacattgatggaaataattatagagagaagaag |
41795685 |
T |
|
| Q |
118 |
aagagattaacaagtaaccagattgattcactggagaagagtttccaagaagaaataaagctagaccctgaaaggaagatgaagctttcaagagagctag |
217 |
Q |
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| T |
41795684 |
aagagattaacaagtaaccagattgattcactggagaagagtttccaagaagaaataaagctagaccctgaaaggaagatgaagctttcaagagagctag |
41795585 |
T |
|
| Q |
218 |
ggctccaacctcgccaaattgctgtttggttccaaaataggcgtacaaggtggaaggctaagcagcttgaacacttgtatgatgttttgaaacaagaatt |
317 |
Q |
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| T |
41795584 |
ggctccaacctcgccaaattgctgtttggttccaaaataggcgtacaaggtggaaggctaagcagcttgaacacttgtatgatgttttgaaacaagaatt |
41795485 |
T |
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| Q |
318 |
tgatgttgtctccaaggaaaaacagaaacttcaagaagaggtaactaattatctttggattgtttgcataaggtaggatgaatttgaatgaaattggaat |
417 |
Q |
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| T |
41795484 |
tgatgttgtctccaaggaaaaacagaaacttcaagaagaggtaactaattatctttggattgtttgcataaggtaggatgaatttgaatgaaattggaat |
41795385 |
T |
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| Q |
418 |
gagata |
423 |
Q |
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| T |
41795384 |
gagata |
41795379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 480
Target Start/End: Complemental strand, 41795359 - 41795324
Alignment:
| Q |
445 |
attatgtaactatatttcattaatttataccaccaa |
480 |
Q |
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| T |
41795359 |
attatgtaactatatttcattaatttataccaccaa |
41795324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 112 - 300
Target Start/End: Original strand, 26932144 - 26932332
Alignment:
| Q |
112 |
aagaagaagagattaacaagtaaccagattgattcactggagaagagtttccaagaagaaataaagctagaccctgaaaggaagatgaagctttcaagag |
211 |
Q |
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| T |
26932144 |
aagaaaaagcgattaacgagtgaacagatggaatcactggagagtagttttcaagaggagatcaaactagaccctcaaaggaagatgaagctttccaagg |
26932243 |
T |
|
| Q |
212 |
agctagggctccaacctcgccaaattgctgtttggttccaaaataggcgtacaaggtggaaggctaagcagcttgaacacttgtatgat |
300 |
Q |
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| T |
26932244 |
agttagggctacagcctcgtcaaattgctatttggttccaaaatagacgtgctaggtggaagaccaagcaacttgaacacttatatgat |
26932332 |
T |
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