View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_45 (Length: 482)
Name: NF9011_low_45
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_45 |
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| [»] scaffold0690 (4 HSPs) |
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Alignment Details
Target: scaffold0690 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 55 - 457
Target Start/End: Complemental strand, 563 - 160
Alignment:
| Q |
55 |
aggacatccaatggatggaaggccattaccaagcaaagatattagcaatgatattgctattatgaatgaagaactctgattgcaagtcatttcacacnnn |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
563 |
aggacatccaatggatggaaggccattaccaagcaaagatattagcaatgatattgctattatgaaggaagaactctgattgcaaatcatttcacacttt |
464 |
T |
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| Q |
155 |
nnnn-gatgtnnnnnnnnnnnngcaaatgaccaaggggcaacggtgatggtaaatagaactcaaattaccaggtccaagacaatgctatatgatatgaat |
253 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
463 |
tttttgatagtaaaaaaaaaaagcaaatgaccaaggggcaacggtgatggtaaatagaactcaaattaccaggtccaagacaatgctatatgatatgaat |
364 |
T |
|
| Q |
254 |
attattaatttaaaatggtaaagtatgaaggaaaacttcaaagtctaagtcaatgctatgatgactttgaccttgagaaagacagttttctattttgtat |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
363 |
attattaatttaaaatggtaaagtatgaaggaaaacttcaaagtccaagtcaatgctatgatgactttgaccttaagaaagacagttttctattttgtat |
264 |
T |
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| Q |
354 |
tatctctagtgtgagaataatctcaagagaattattaatttaaaacggtaatgtatgaatgaaaacttccaagtccaattcaatattgtgatgactttga |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
263 |
tatctctagtgtgagaataatctcaagagaattattaatttaaaacggtaatgtatgaatgaaaacttccaagtccaattcaatattgtgatgactttga |
164 |
T |
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| Q |
454 |
cctt |
457 |
Q |
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|||| |
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| T |
163 |
cctt |
160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 458
Target Start/End: Complemental strand, 363 - 289
Alignment:
| Q |
384 |
attattaatttaaaacggtaatgtatgaatgaaaacttccaagtccaattcaatattgtgatgactttgacctta |
458 |
Q |
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||||||||||||||| ||||| ||||||| ||||||||| |||||||| ||||| | ||||||||||||||||| |
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| T |
363 |
attattaatttaaaatggtaaagtatgaaggaaaacttcaaagtccaagtcaatgctatgatgactttgacctta |
289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 233 - 159
Alignment:
| Q |
254 |
attattaatttaaaatggtaaagtatgaaggaaaacttcaaagtctaagtcaatgctatgatgactttgaccttg |
328 |
Q |
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||||||||||||||| ||||| ||||||| ||||||||| ||||| || ||||| | ||||||||||||||||| |
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| T |
233 |
attattaatttaaaacggtaatgtatgaatgaaaacttccaagtccaattcaatattgtgatgactttgaccttg |
159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 672 - 631
Alignment:
| Q |
17 |
cttccaacacctgcgatgtgtagttaatgtcccttatgagga |
58 |
Q |
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||||||| || |||||||||||||||||| |||||||||||| |
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| T |
672 |
cttccaatacttgcgatgtgtagttaatgacccttatgagga |
631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 55 - 457
Target Start/End: Original strand, 15911542 - 15911948
Alignment:
| Q |
55 |
aggacatccaatggatggaaggccattaccaagcaaagatattagcaatgatattgctattatgaatgaagaactctgattgcaagtcatttcacacnnn |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
15911542 |
aggacatccaatggatggaaggccattaccaagcaaagatattagcaatgatattgctattatgaaggaagaactctgattgcaaatcatttcacacttt |
15911641 |
T |
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| Q |
155 |
nnnn-gatgtnnnnnnnnnnnngcaaatgaccaaggggcaacggtgatggtaaatagaactcaaattaccaggtccaagacaatgctatatgatatgaat |
253 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15911642 |
tttttgatgtaaaaaaaaaaaagcaaatgaccaaggggcaacggtgatggtaaatagaactcaaattaccaggtccaagacaatgctatatgatatgaat |
15911741 |
T |
|
| Q |
254 |
attattaatttaaaatggtaaagtatgaaggaaaacttcaaagtctaagtcaatgctatgatgactttgaccttgagaaagacagttttctattttgtat |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15911742 |
attattaatttaaaatggtaaagtatgaaggaaaacttcaaagtccaagtcaatgctatgatgactttgaccttaagaaagacagttttctattttgtat |
15911841 |
T |
|
| Q |
354 |
tatctctagtgtgagaataatctcaagagaattattaatttaaaacggta---atgtatgaatgaaaacttccaagtccaattcaatattgtgatgactt |
450 |
Q |
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| T |
15911842 |
tatctctagtgtgagaataatctcaagagaattattaatttaaaacggtaattatgtatgaatgaaaacttccaagtccaattcaatattgtgatgactt |
15911941 |
T |
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| Q |
451 |
tgacctt |
457 |
Q |
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||||||| |
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| T |
15911942 |
tgacctt |
15911948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 15911742 - 15911816
Alignment:
| Q |
384 |
attattaatttaaaacggtaatgtatgaatgaaaacttccaagtccaattcaatattgtgatgactttgacctta |
458 |
Q |
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||||||||||||||| ||||| ||||||| ||||||||| |||||||| ||||| | ||||||||||||||||| |
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| T |
15911742 |
attattaatttaaaatggtaaagtatgaaggaaaacttcaaagtccaagtcaatgctatgatgactttgacctta |
15911816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 15911433 - 15911474
Alignment:
| Q |
17 |
cttccaacacctgcgatgtgtagttaatgtcccttatgagga |
58 |
Q |
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| T |
15911433 |
cttccaatacatgcgatgtgtagttaatgacccttatgagga |
15911474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 9243911 - 9243964
Alignment:
| Q |
285 |
aaaacttcaaagtctaagtcaatgctatgatgactttgaccttgagaaagacag |
338 |
Q |
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|||| ||| ||||| | |||||||||||||||| ||||||| |||||||||||| |
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| T |
9243911 |
aaaatttccaagtccaggtcaatgctatgatgagtttgaccctgagaaagacag |
9243964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 9336257 - 9336201
Alignment:
| Q |
285 |
aaaacttcaaagtctaagtcaatgctatgatgactttgaccttgagaaagacagttt |
341 |
Q |
| |
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|||| ||| ||||| | ||||||||||| |||||||||||| | ||||||||||||| |
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|
| T |
9336257 |
aaaatttccaagtccaggtcaatgctataatgactttgacccttagaaagacagttt |
9336201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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