View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_49 (Length: 480)
Name: NF9011_low_49
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 18165206 - 18164926
Alignment:
| Q |
18 |
ataaaaagggttatgctaataattatcatagcccacattagcaaataaaatcatcctttcctctattcacaaatcaaatgaattaactaattgtaatact |
117 |
Q |
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| T |
18165206 |
ataaaaagggttatgctaataattatcatagcccacattagcaaataaaatcatcctttcctctattcacaaatcaaatgcattaactaattgtaatact |
18165107 |
T |
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| Q |
118 |
agatatggaacttccacaaatcaaacattttcttaagcctctcattgttgtatttttgttgttcatagtacttgcaaattgtggtttctctttcccttca |
217 |
Q |
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| T |
18165106 |
agatatggaacttccacaaatcaaacattttcataagcctctcattgttgtatttttgttgttaatagtacttgcaaattgtggtttctctttcccttca |
18165007 |
T |
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| Q |
218 |
gaacctcaaggtatgcctataaagctcattatgcttcgtttcttctttttctatataaaatgttagcacttagtagtttgt |
298 |
Q |
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| T |
18165006 |
gaacctcaaggtatgcctataaagctcattatgcttcgtttcttctttttctatagaaaatgttagcacttagtagtttgt |
18164926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 320 - 444
Target Start/End: Complemental strand, 18164888 - 18164765
Alignment:
| Q |
320 |
tatgtagcatcgacacttcaaattgatagtgtgtctgtatccgatatatgtcagtgtctaaaaccaacacgacactgacacatttagttgcgttcattta |
419 |
Q |
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||||||||||||| |||| ||||||| |||||| | ||||||| || |||||||| |||||||||||||||| |||||||||||||||||||| || |
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| T |
18164888 |
tatgtagcatcgatactttgaattgatcgtgtgtacatgtccgatacatatcagtgtccaaaaccaacacgacacagacacatttagttgcgttcaattg |
18164789 |
T |
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| Q |
420 |
ctttcatgttttttatgttatcgat |
444 |
Q |
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| T |
18164788 |
ctttca-gttttttatgttatcgat |
18164765 |
T |
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