View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9011_low_51 (Length: 474)

Name: NF9011_low_51
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9011_low_51
NF9011_low_51
[»] chr4 (5 HSPs)
chr4 (1-215)||(22694769-22694983)
chr4 (275-337)||(22695041-22695103)
chr4 (412-474)||(22714611-22714673)
chr4 (412-474)||(22990552-22990614)
chr4 (412-474)||(28948868-28948930)
[»] chr8 (2 HSPs)
chr8 (1-218)||(19644231-19644450)
chr8 (275-337)||(19644505-19644567)
[»] chr1 (4 HSPs)
chr1 (1-218)||(4342109-4342328)
chr1 (277-469)||(5928004-5928196)
chr1 (275-378)||(4342384-4342482)
chr1 (159-218)||(5927888-5927947)
[»] chr3 (2 HSPs)
chr3 (1-218)||(7009183-7009402)
chr3 (275-378)||(7009459-7009556)
[»] chr5 (2 HSPs)
chr5 (1-218)||(22811293-22811530)
chr5 (275-337)||(22811179-22811241)
[»] chr7 (1 HSPs)
chr7 (412-471)||(20087912-20087971)
[»] scaffold0009 (1 HSPs)
scaffold0009 (412-474)||(200484-200546)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 22694769 - 22694983
Alignment:
Q  1 cctcatagtttcattaactatgtagttactctcttcatacaaacttctatatataggttgactcatttgtcactctttcattcttaaacaagcaaatagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22694769 cctcatagtttcattaactatgtagttactctcttcatacaaacttctatatataggttggctcatttgtcactctttcattcttaaacaagcaaatagc 22694868  T
Q  101 caaatagttacagtgtttggtactcaagggtaagctcaaacactcatcttttgtctattaattcacttttgataacattgcatttgatttgcttgataaa 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||    
T  22694869 caaatagttgcagtgtttggtactcaagggtaagctcaaacactcatcttctgtctattaattcaattttgataacattgcatttgatgtgtttgataaa 22694968  T
Q  201 atgcctaaataaaaa 215  Q
    |||||||||||||||    
T  22694969 atgcctaaataaaaa 22694983  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 22695041 - 22695103
Alignment:
Q  275 cctgaaatattaatcatattgatggagtttgaaaatagcttctatgtttttcatcaaatgata 337  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22695041 cctgaaatattaatgatattgatggagtttgaaaatagcttctatgcttttcatcaaatgata 22695103  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 412 - 474
Target Start/End: Complemental strand, 22714673 - 22714611
Alignment:
Q  412 tttttacttcagatttgttgttcacttatcctccataagctctatatttcagttttaactagt 474  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22714673 tttttgcttcggatttgttgttcacttatcctccataaactctatatttcagttttaactagt 22714611  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 412 - 474
Target Start/End: Original strand, 22990552 - 22990614
Alignment:
Q  412 tttttacttcagatttgttgttcacttatcctccataagctctatatttcagttttaactagt 474  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22990552 tttttgcttcggatttgttgttcacttatcctccataaactctatatttcagttttaactagt 22990614  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 412 - 474
Target Start/End: Complemental strand, 28948930 - 28948868
Alignment:
Q  412 tttttacttcagatttgttgttcacttatcctccataagctctatatttcagttttaactagt 474  Q
    ||||| |||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  28948930 tttttgcttcggatttgttgttcacttatcctccttaaactctatatttcagttttaactagt 28948868  T

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Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 19644231 - 19644450
Alignment:
Q  1 cctcatagtttcattaactatgtagttactctct--tcatacaaacttctatatataggttgactcatttgtcactctttcattcttaaacaagcaaata 98  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  19644231 cctcatagtttcattaactatgtagttactctctgttcatacaaacttctatatataggttggctcatttatcactctttcattcttaaacaagcaaata 19644330  T
Q  99 gccaaatagttacagtgtttggtactcaagggtaagctcaaacactcatcttttgtctattaattcacttttgataacattgcatttgatttgcttgata 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||    
T  19644331 gccaaatagttacagtgtttggtactcaagggtaagctcaaacactcatcttctgtctattaattcaattttgataacattgcatttgatgtgtttgata 19644430  T
Q  199 aaatgcctaaataaaaaaca 218  Q
    ||||||||||||||||||||    
T  19644431 aaatgcctaaataaaaaaca 19644450  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 19644505 - 19644567
Alignment:
Q  275 cctgaaatattaatcatattgatggagtttgaaaatagcttctatgtttttcatcaaatgata 337  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19644505 cctgaaatattaatgatattgatggagtttgaaaatagcttctatgtttttcatcaaatgata 19644567  T

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Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4342109 - 4342328
Alignment:
Q  1 cctcatagtttcattaactatgtagttactctct--tcatacaaacttctatatataggttgactcatttgtcactctttcattcttaaacaagcaaata 98  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4342109 cctcatagtttcattaactatgtagttactctctgttcatacaaacttctatatataggttggctcatttgtcactctttcattcttaaacaagcaaata 4342208  T
Q  99 gccaaatagttacagtgtttggtactcaagggtaagctcaaacactcatcttttgtctattaattcacttttgataacattgcatttgatttgcttgata 198  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||    
T  4342209 gccaaatagttgcagtgtttggtactcaagggtaagctcaaacactcatcttctgtctattaattcaattttgataacattgcatttgatgtgtttgata 4342308  T
Q  199 aaatgcctaaataaaaaaca 218  Q
    |||||||| |||||||||||    
T  4342309 aaatgcctgaataaaaaaca 4342328  T

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Target: chr1; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 277 - 469
Target Start/End: Original strand, 5928004 - 5928196
Alignment:
Q  277 tgaaatattaatcatattgatggagtttgaaaatagcttctatgtttttcatcaaatgataatgagattgatgaatattatttgcattgtgtgagtgctt 376  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5928004 tgaaatattaatgatattgatggagtttgaaaatagcttctatgtttttcatcaaatgataatgagattgatgaatattatttgcattgtatgagtgctt 5928103  T
Q  377 tatatttactcttaacaggttttagatgtctgtgatttttacttcagatttgttgttcacttatcctccataagctctatatttcagttttaa 469  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  5928104 tatatttactcttaacaggttttagatgtctgtgttttttgcttcagatttgttgtgcacttatcctcaataaactctatatttcagttttaa 5928196  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 275 - 378
Target Start/End: Original strand, 4342384 - 4342482
Alignment:
Q  275 cctgaaatattaatcatattgatggagtttgaaaatagcttctatgtttttcatcaaatgataatgagattgatgaatattatttgcattgtgtgagtgc 374  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |   | |||  ||||||||||||||||| |||||||    
T  4342384 cctgaaatattaatgatattgatggagtttgaaaatagcttctatgtttttcatcaaatgatact---aatga--aatattatttgcattgtatgagtgc 4342478  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 5927888 - 5927947
Alignment:
Q  159 taattcacttttgataacattgcatttgatttgcttgataaaatgcctaaataaaaaaca 218  Q
    ||||||| |||||||||||||||||||||| || ||||||||||||||||  ||||||||    
T  5927888 taattcagttttgataacattgcatttgatgtgtttgataaaatgcctaataaaaaaaca 5927947  T

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Target: chr3 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 7009183 - 7009402
Alignment:
Q  1 cctcatagtttcattaactatgtagttactctct--tcatacaaacttctatatataggttgactcatttgtcactctttcattcttaaacaagcaaata 98  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  7009183 cctcatagtttcattaactatgtagttactctctgttcatacaaacttctatatataggttggctcatttgtcactctttcatttttaaacaagcaaata 7009282  T
Q  99 gccaaatagttacagtgtttggtactcaagggtaagctcaaacactcatcttttgtctattaattcacttttgataacattgcatttgatttgcttgata 198  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| || ||||||    
T  7009283 gccaaatagctgcagtgtttggtactcaagggtaagctcaaacactcatcttctgtctattaattcaattttgataacattgcatctgatgtgtttgata 7009382  T
Q  199 aaatgcctaaataaaaaaca 218  Q
    ||||||||||||||||||||    
T  7009383 aaatgcctaaataaaaaaca 7009402  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 275 - 378
Target Start/End: Original strand, 7009459 - 7009556
Alignment:
Q  275 cctgaaatattaatcatattgatggagtttgaaaatagcttctatgtttttcatcaaatgataatgagattgatgaatattatttgcattgtgtgagtgc 374  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||      | | |||||||||||||||||||| |||||||    
T  7009459 cctgaaatattaatgatattgatggagtttgaaaatagcttctatgtttttcatcaaatgat------actaatgaatattatttgcattgtatgagtgc 7009552  T

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Target: chr5 (Bit Score: 136; Significance: 9e-71; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 22811530 - 22811293
Alignment:
Q  1 cctcatagtttcattaactatgtagttactctct--tcatacaaacttctatatataggttgactcatttgtcactctttcattcttaaaca-------- 90  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||            
T  22811530 cctcatagtttcattaactatgttgttactctctgttcatacaaacttctatatataggttggctcatttgtcactctttcattcttaaacacgcaggaa 22811431  T
Q  91 ----------agcaaatagccaaatagttacagtgtttggtactcaagggtaagctcaaacactcatcttttgtctattaattcacttttgataacattg 180  Q
              ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  22811430 aaggaacacaagcaaatagccaaatagttgcagtgtttggtactcaagggtaagctcaaacactcatcttctatctattaattcaattttgataacattg 22811331  T
Q  181 catttgatttgcttgataaaatgcctaaataaaaaaca 218  Q
    |||||||| || ||||||||||||||||||||||||||    
T  22811330 catttgatgtgtttgataaaatgcctaaataaaaaaca 22811293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 22811241 - 22811179
Alignment:
Q  275 cctgaaatattaatcatattgatggagtttgaaaatagcttctatgtttttcatcaaatgata 337  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22811241 cctgaaatattaatgatattgatggagtttgaaaatagcttctatgtttttcatcaaatgata 22811179  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 412 - 471
Target Start/End: Original strand, 20087912 - 20087971
Alignment:
Q  412 tttttacttcagatttgttgttcacttatcctccataagctctatatttcagttttaact 471  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  20087912 tttttccttcagatttgttgttcacctgtcctccataagctctatatttcagttttaact 20087971  T

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Target: scaffold0009 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 412 - 474
Target Start/End: Complemental strand, 200546 - 200484
Alignment:
Q  412 tttttacttcagatttgttgttcacttatcctccataagctctatatttcagttttaactagt 474  Q
    ||||| |||| ||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  200546 tttttgcttcggatttgttgttcacttatcctccataaactatatatttcagttttaactagt 200484  T

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