View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_56 (Length: 448)
Name: NF9011_low_56
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Original strand, 27295218 - 27295630
Alignment:
| Q |
17 |
aacaaacctccctataatcacactattattgacctcttgctaattgcagggccagtatacactaatgaagaaaatttcctattaaacaagactnnnnnnn |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27295218 |
aacaaacctccctataatcacactattattgacctcttgctaattgcagggccagtatacactaatgaagaaaatttcctattaaacaagacttatatat |
27295317 |
T |
|
| Q |
117 |
nnnnnnnnnnnnnnnnnngtatctaactagctaaaattccatgatcaacataaatcatgagctgtctgaatccgattgttcggtggtttcccaatttgta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27295318 |
aataatatacataataatgtatctaactagctaaaattccatgatcaacataaatcatgagctgtctgaatccgattgttcggtggtttcccaatttgta |
27295417 |
T |
|
| Q |
217 |
gacaatcaataggtggaacagtagcagttttcagttcaccatatgtctcccaacagaatggatcataaagatggtatttatcttgaacaggttgtaactc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27295418 |
gacaatcaataggtggaacagtagcagttttcagttcaccatatgtctcccaacagaatggatcataaagatggtatttatcttgaacaggttgtaactc |
27295517 |
T |
|
| Q |
317 |
aacacttgttaaagaaacatctatacaaggcaagctatcactgcatgcaaagtgaaccggcttaactgtgtatgttccctttataccttcatagttgatt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27295518 |
aacacttgttaaagaaacatctatacaaggcaagctatcactgcatgcaaagtgaaccggcttaactgtgtatgttccctttataccttcatagttgatt |
27295617 |
T |
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| Q |
417 |
cctgtgagagcca |
429 |
Q |
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| T |
27295618 |
cctgtgagagcca |
27295630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 161 - 420
Target Start/End: Complemental strand, 14739416 - 14739157
Alignment:
| Q |
161 |
tcaacataaatcatgagctgtctgaatccgattgttcggtggtttcccaatttgtagacaatcaataggtggaacagtagcagttttcagttcaccatat |
260 |
Q |
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|||||||| ||| ||| | || ||||| ||||| |||| ||||||||||| |||| |||| |||| ||||| ||||| | |||| | | ||||||| | |
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| T |
14739416 |
tcaacatatatcgtgatcagtttgaattcgattattcgacggtttcccaatctgtaaacaaccaattggtgggacagttggagttcttaattcaccaaaa |
14739317 |
T |
|
| Q |
261 |
gtctcccaacagaatggatcataaagatggtatttatcttgaacaggttgtaactcaacacttgttaaagaaacatctatacaaggcaagctatcactgc |
360 |
Q |
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|||| ||| || ||||||||||| ||||| ||||| ||||||| |||| |||||||||| | |||||||||||||||| ||| |||| ||||||||||| |
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| T |
14739316 |
gtctgccagcaaaatggatcatatagatgatatttttcttgaattggttttaactcaacagtggttaaagaaacatctacacatggcaggctatcactgc |
14739217 |
T |
|
| Q |
361 |
atgcaaagtgaaccggcttaactgtgtatgttccctttataccttcatagttgattcctg |
420 |
Q |
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| T |
14739216 |
aagcaaagtgtactggtttaactgtgtatgttccttttattctttcgtagttgattcctg |
14739157 |
T |
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