View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_58 (Length: 446)
Name: NF9011_low_58
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 429
Target Start/End: Original strand, 45979702 - 45980121
Alignment:
| Q |
7 |
tttggtgttggtagattttgcatgttagcatacatatagaggcaaattctttttaatagtgaaattggtaaattttctcaatatttcacccgttgagttt |
106 |
Q |
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| T |
45979702 |
tttggagttggtagattttgcatgttagcatacatatagaggcaaattctttttaatagtgaaattggtaatttttctcaatatttcacccgttgagttt |
45979801 |
T |
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| Q |
107 |
ttacttcaggtacctcactttcaataaatttgtaacagtttannnnnnnnnnnnnagcctgagtggatggccccggaatttctccgtggagaaccttcga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45979802 |
ttacttcaggtacctcactttcaataaatttgtaacagtttattttattttt---agcctgagtggatggccccggaatttctccgtggagaaccttcga |
45979898 |
T |
|
| Q |
207 |
atgagaaagccgacgtatacagttttggagttatcctatgggaacttgtgaccatgcaacagccatggagtggacttaaccctccccaggtaaacgtaat |
306 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45979899 |
atgagaaagctgacgtatacagttttggagttatcctatgggaacttgtgaccatgcaacagccatggagtggacttaaccctccccaggtaaacttaat |
45979998 |
T |
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| Q |
307 |
agtaaagttcatttgcnnnnnnnnnnnnnnnttaatttagaagggtatatggtggagaggtatacatgtgaacttgcatatgaaacttccagttttacca |
406 |
Q |
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| T |
45979999 |
agtaaagttcatttgcaaaaaaaaaataaaaataatttagaagggtatatagtggagaggtatacatgtgaacttgcatatgaaacttccagttctacca |
45980098 |
T |
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| Q |
407 |
atggagtttcaaaaataataacc |
429 |
Q |
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| T |
45980099 |
atggagtttcaaaaataataacc |
45980121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 301
Target Start/End: Complemental strand, 28048250 - 28048111
Alignment:
| Q |
162 |
agcctgagtggatggccccggaatttctccgtggagaaccttcgaatgagaaagccgacgtatacagttttggagttatcctatgggaacttgtgaccat |
261 |
Q |
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|||||||||||||||| || || ||||| |||||||||||| | || ||||| | || || ||||||||||| || ||||| |||||||| |||||| | |
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| T |
28048250 |
agcctgagtggatggctccagagtttcttcgtggagaacctacaaacgagaagtctgatgtttacagttttggtgtcatcctgtgggaactagtgacctt |
28048151 |
T |
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| Q |
262 |
gcaacagccatggagtggacttaaccctccccaggtaaac |
301 |
Q |
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| T |
28048150 |
acaacaaccatggaatggacttagccatgcccaggtaaac |
28048111 |
T |
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