View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_60 (Length: 436)
Name: NF9011_low_60
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_60 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 29 - 417
Target Start/End: Complemental strand, 9832607 - 9832218
Alignment:
| Q |
29 |
gaagtttcgtagttagatcataataaccacagaaccataag-aacaaacaagtaccaatgtaacaaaaacatgagccatcatcacttactagttggtgtc |
127 |
Q |
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||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
9832607 |
gaagtttcgtagttagatcattataaccacggaatcataaggaacaaacaagtaccaatacaacaaaaacatgagccatcaagacttactagttggtgtc |
9832508 |
T |
|
| Q |
128 |
gaaccatttggtcatctccattgcaggcacagaagcattacctctggccatggagaagtaggtatcgaatccaatctcaccgccagtccatccgtatctt |
227 |
Q |
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| T |
9832507 |
aaaccacttggtcatctccattgcaggcacagaagcgttacctctggccatggagaagtaggtatcgaatccaatctcaccgccagtccatccgtatctt |
9832408 |
T |
|
| Q |
228 |
gggggaactgcaccaaccatggcggtggtattgagcacctgatcatagtatgcgaaagtgttgctagggatatacttgatcccggcactggacatctgtt |
327 |
Q |
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| T |
9832407 |
gggggaacagcaccgaccatggcggtggtattgagcacctgatcatagtatgcgaaagtgttgctagggatatacttgatcccggcactggacatctgtt |
9832308 |
T |
|
| Q |
328 |
tccagatagatgccctgaggtcagcagccaccttctccaaatcctcggcgctgctcttcttatcccagaatgattcaagggcgaacttga |
417 |
Q |
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| T |
9832307 |
tccagatagatgccctgaggtcagcagccaccttctccaaatcctcggcgctgctcttcttatcccagaatgattcaagggcgaacttga |
9832218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 109 - 403
Target Start/End: Original strand, 33470131 - 33470425
Alignment:
| Q |
109 |
tcacttactagttggtgtcgaaccatttggtcatctccattgcaggcacagaagcattacctctggccatggagaagtaggtatcgaatccaatctcacc |
208 |
Q |
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| T |
33470131 |
tcacttactagttggtgtcgaaccacttggtcatctccatagcagggacggtggcattacctctagccattgaaaagtaagtatcgaatccaatctcacc |
33470230 |
T |
|
| Q |
209 |
gccagtccatccgtatcttgggggaactgcaccaaccatggcggtggtattgagcacctgatcatagtatgcgaaagtgttgctagggatatacttgatc |
308 |
Q |
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||||||||||| || || || ||||| || || | ||||||| |||| || || ||||||||||| | ||||||||||| ||||||||||||||| |
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| T |
33470231 |
accagtccatccatacctgggtggaacggccccgagagtggcggtagtatcaagtacatgatcatagtaagtaaaagtgttgcttgggatatacttgatc |
33470330 |
T |
|
| Q |
309 |
ccggcactggacatctgtttccagatagatgccctgaggtcagcagccaccttctccaaatcctcggcgctgctcttcttatcccagaatgattc |
403 |
Q |
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|| || ||||||||||||||||| ||||| || || ||||||| ||||||| |||||||||||| |||||||| || |||||||||||||| |
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| T |
33470331 |
ccaacatcagacatctgtttccagatggatgctcttagatcagcagaaaccttcttcaaatcctcggcactgctctttttgtcccagaatgattc |
33470425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 111 - 415
Target Start/End: Complemental strand, 35945308 - 35945004
Alignment:
| Q |
111 |
acttactagttggtgtcgaaccatttggtcatctccattgcaggcacagaagcattacctctggccatggagaagtaggtatcgaatccaatctcaccgc |
210 |
Q |
| |
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||||||||||||||||| ||||| |||||||| ||||| || |||||||| ||||| ||||| |||||||||||||| |||| || |||||||| || | |
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| T |
35945308 |
acttactagttggtgtcaaaccacttggtcatttccatagctggcacagatgcatttcctctcgccatggagaagtaaatatcaaaaccaatctccccac |
35945209 |
T |
|
| Q |
211 |
cagtccatccgtatcttgggggaactgcaccaaccatggcggtggtattgagcacctgatcatagtatgcgaaagtgttgctagggatatacttgatccc |
310 |
Q |
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|| ||||| ||||| ||||||||||| | |||||| || || | | || ||||||||||||| ||| |||||||| || |||| || || || |
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| T |
35945208 |
cattccatttatatctgtcaggaactgcaccgagcatggctgttgtgtccaatacttgatcatagtatgagaaggtgttgcttggaatatgctgaattcc |
35945109 |
T |
|
| Q |
311 |
ggcactggacatctgtttccagatagatgccctgaggtcagcagccaccttctccaaatcctcggcgctgctcttcttatcccagaatgattcaagggcg |
410 |
Q |
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||| || |||||| |||||||||| || || |||| |||||| |||| || ||| ||||| || || ||||| |||||| |||||||| ||||| |
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| T |
35945108 |
agcatcggccatctgcttccagatagctgatctaaggttagcagcaacctgcttcaattcctcagcactactctttccatcccaaaatgattccagggca |
35945009 |
T |
|
| Q |
411 |
aactt |
415 |
Q |
| |
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||||| |
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|
| T |
35945008 |
aactt |
35945004 |
T |
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