View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_63 (Length: 434)
Name: NF9011_low_63
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 137 - 301
Target Start/End: Complemental strand, 50650711 - 50650546
Alignment:
| Q |
137 |
ccactcttcatatatacaaaaatacattaaaacacggagaaaatggtaaattcaggaatatatttttcccgccttaaagaacaaaatttcggatcccgct |
236 |
Q |
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| T |
50650711 |
ccactcttcatatatacaaaaatacattaaaacatggagaaaatggtaaattcaggaatatatttttcccgccttaaagaacaaaatttcggatcccgct |
50650612 |
T |
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| Q |
237 |
tttattatttttcgtcttttccgctctccatatacaaaatatacttttt-aagggtttctcttccg |
301 |
Q |
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| T |
50650611 |
tttattatttttcgtcttttccgctctccatatacaaaatatactttttaaagggtttctcttccg |
50650546 |
T |
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Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 303 - 421
Target Start/End: Complemental strand, 50649989 - 50649871
Alignment:
| Q |
303 |
tccccccttttttctatttacttatcgtgtttgttgaaagtcctcaaagactttgtctggcaaatcgttatttnnnnnnntttaacatagaattacgatc |
402 |
Q |
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| T |
50649989 |
tccccccttttttctatgtacttatcgtgtttgttgaaagtcctcaaagactttgtctggcaaatcgttatttccccccctttaacatagaattacgatc |
50649890 |
T |
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| Q |
403 |
tgtgtttcaagttaaaact |
421 |
Q |
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| T |
50649889 |
tgggtatcaagttaaaact |
50649871 |
T |
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