View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9011_low_64 (Length: 433)

Name: NF9011_low_64
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9011_low_64
NF9011_low_64
[»] chr1 (3 HSPs)
chr1 (1-98)||(50650939-50651036)
chr1 (319-405)||(50651257-50651343)
chr1 (187-268)||(50651125-50651206)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 50650939 - 50651036
Alignment:
Q  1 atttttaaaccacaaatttataagtagaaatcaaacttgataaatttataagtttataacgcacaaagtaaccactcgtgcttgatgaggcaataaac 98  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50650939 atttttaaaccacaaatttataagtagaaatcaaacttaataaatttataagtttataacgcacaaagtaaccacttgtgcttgatgaggcaataaac 50651036  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 319 - 405
Target Start/End: Original strand, 50651257 - 50651343
Alignment:
Q  319 aaaatcacactcggatatattgcaattgccattttggttgaacgggttgaagcatagttggctcaacaaatatttatttttatttcc 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50651257 aaaatcacactcggatatattgcaattgccattttggttgaacgggttgaagcatagttggctcaacaaatatttatttttatttcc 50651343  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 187 - 268
Target Start/End: Original strand, 50651125 - 50651206
Alignment:
Q  187 ggatactttaagaataattgtaatttatgtgcaatgnnnnnnngacatagacaattgttttaacgcttagataatacaagca 268  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| ||||||||||||||    
T  50651125 ggatactttaagaataattgtaatttatgtgcaatgtttttttgacatagacaattgttttaacgctcagataatacaagca 50651206  T

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