View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9011_low_65 (Length: 429)
Name: NF9011_low_65
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_65 |
 | |
|
| [»] scaffold0096 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 10624903 - 10624499
Alignment:
| Q |
18 |
cttcagcagctacccagatgcaccaacctgaaaatgtgaacgatcccagtggttcacactggctccttggtgcattattccttctcattggttgtgctgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10624903 |
cttcagcagctacccagatgcaccaacctgaaaatgtgaacgatcccagtggttcacactggctccttggtgcattattccttctcattggttgtgctgg |
10624804 |
T |
|
| Q |
118 |
cttctctgcattttacattttacaagtaagttcacatatacatattagaaccacaaacttatactttaaacaaataatgtctatagtcgttaaagtttca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10624803 |
cttctctgcattttacattttacaagtaagttcacatatacatattagaaccacaaacttatactttaaccaaataatgtctatagtcgttaaagtttca |
10624704 |
T |
|
| Q |
218 |
aatgatttttaaatattggtttcgacccgactaaacaatttctaatcaattccaggctataacattgagaaagtatccagcagagatgtcactagccacg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10624703 |
aatgatttttaaatattggtttcgacccgactaaacaatttctaatcaattgcaggctataacattgagaaagtatccagcagagatgtcactggccacg |
10624604 |
T |
|
| Q |
318 |
tgggtttgctttattggtgcacttcaaagcagtgctgtaactattttcatggagcgcaaacatcctgaagcctggtctttgggcatggactctagactct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10624603 |
tgggtttgctttattggtgcacttcaaagcagtgctgtaactattttcatggagcgcaaacatcctgaagcctggtctttgggcctggactctagactct |
10624504 |
T |
|
| Q |
418 |
ctgct |
422 |
Q |
| |
|
|||| |
|
|
| T |
10624503 |
ttgct |
10624499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 179 - 422
Target Start/End: Original strand, 21095186 - 21095429
Alignment:
| Q |
179 |
tactttaaacaaataatgtctatagtcgttaaagtttcaaatgatttttaaatattggtttcgaccc-gactaaacaatttctaatcaattccaggctat |
277 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||||| || ||||| ||||| | ||||||||| || |||||||| || ||||||| ||||| | |
|
|
| T |
21095186 |
tacttttaacaaatgatgtctattgtcgttaaagtttcgaacaattttcaaatacag-tttcgaccctgaataaacaatctcatatcaattgcaggccac |
21095284 |
T |
|
| Q |
278 |
aacattgagaaagtatccagcagagatgtcactagccacgtgggtttgctttattggtgcacttcaaagcagtgctgtaactattttcatggagcgcaaa |
377 |
Q |
| |
|
| |||||||||||||||||||| | |||||| ||||||| |||||||||||| ||||||||||||||||| || |||||||||||| |||||||||||| |
|
|
| T |
21095285 |
atcattgagaaagtatccagcaaatatgtcattagccacatgggtttgctttgttggtgcacttcaaagctttgttgtaactattttaatggagcgcaaa |
21095384 |
T |
|
| Q |
378 |
catcctgaagcctggtctttgggcatggactctagactctctgct |
422 |
Q |
| |
|
|| |||||||| |||||||||||| || |||||||||||| |||| |
|
|
| T |
21095385 |
caccctgaagcttggtctttgggcctgaactctagactctttgct |
21095429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 21094890 - 21094953
Alignment:
| Q |
24 |
cagctacccagatgcaccaacctgaaaatgtgaacgatcccagtggttcacactggctccttgg |
87 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
21094890 |
cagctactcagatgcaccaacctgaaaatgtgaacgatcccactggtgcacactggctccttgg |
21094953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 173 - 422
Target Start/End: Complemental strand, 45560 - 45311
Alignment:
| Q |
173 |
aacttatactttaaacaaataatgtctatagtcgttaaagtttcaaatgatttttaaatattggtttcgaccc-gactaaacaatttctaatcaattcca |
271 |
Q |
| |
|
||||| |||||| ||||||| |||||||| || ||||||||||| || ||||| ||||| | ||||||||| || |||||||| ||| ||||||| || |
|
|
| T |
45560 |
aacttctacttttaacaaatgatgtctattgttgttaaagtttcgaacaattttcaaatacag-tttcgaccctgaataaacaatctcttatcaattgca |
45462 |
T |
|
| Q |
272 |
ggctataacattgagaaagtatccagcagagatgtcactagccacgtgggtttgctttattggtgcacttcaaagcagtgctgtaactattttcatggag |
371 |
Q |
| |
|
||| | | |||||||||||||||||||| | |||||| ||||||| |||||||||||| |||||||||||||||||| || |||||||||| | |||||| |
|
|
| T |
45461 |
ggccacatcattgagaaagtatccagcaaatatgtcattagccacatgggtttgctttgttggtgcacttcaaagcactgttgtaactattgtaatggag |
45362 |
T |
|
| Q |
372 |
cgcaaacatcctgaagcctggtctttgggcatggactctagactctctgct |
422 |
Q |
| |
|
|||||||| |||||| | |||||||||||| ||||||||||||||| |||| |
|
|
| T |
45361 |
cgcaaacaccctgaaacttggtctttgggcctggactctagactctttgct |
45311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 46104 - 45964
Alignment:
| Q |
20 |
tcagcagctacccagatgcaccaacctgaaaatgtgaacgatcccagtggttcacactggctccttggtgcattattccttctcattggttgtgctggct |
119 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| ||||| || || | |||||||||| ||| |
|
|
| T |
46104 |
tcagcagctactcagatgcatcaacctgaaaatgtgaacgatcccactggtgcacactggctccttggagcattgtttctcgtaattggttgtgttggaa |
46005 |
T |
|
| Q |
120 |
tctctgcattttacattttacaagtaagttcacatatacata |
161 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
46004 |
tctctgccttctacattttacaagtaag-tcacatatacata |
45964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University