View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9011_low_68 (Length: 429)

Name: NF9011_low_68
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9011_low_68
NF9011_low_68
[»] chr3 (3 HSPs)
chr3 (46-183)||(263570-263707)
chr3 (74-183)||(264302-264410)
chr3 (102-183)||(40145002-40145083)
[»] chr7 (6 HSPs)
chr7 (46-183)||(29527083-29527220)
chr7 (66-183)||(20123169-20123286)
chr7 (43-183)||(4167048-4167187)
chr7 (99-183)||(4163396-4163480)
chr7 (44-183)||(20122618-20122756)
chr7 (76-183)||(29525146-29525252)
[»] chr4 (5 HSPs)
chr4 (46-175)||(24196321-24196448)
chr4 (46-183)||(21436135-21436272)
chr4 (76-183)||(24195621-24195728)
chr4 (124-183)||(15539875-15539934)
chr4 (142-183)||(21435439-21435480)
[»] chr5 (7 HSPs)
chr5 (46-183)||(33766524-33766661)
chr5 (46-183)||(10555418-10555555)
chr5 (76-183)||(42994516-42994623)
chr5 (109-183)||(23244294-23244368)
chr5 (142-183)||(23237080-23237121)
chr5 (142-183)||(42995306-42995347)
chr5 (144-183)||(33767312-33767351)
[»] chr2 (2 HSPs)
chr2 (46-183)||(26234747-26234883)
chr2 (48-183)||(26233888-26234020)
[»] chr6 (2 HSPs)
chr6 (98-183)||(25344885-25344970)
chr6 (145-183)||(25345577-25345615)
[»] chr8 (3 HSPs)
chr8 (44-183)||(18684346-18684489)
chr8 (44-183)||(18729911-18730054)
chr8 (112-183)||(8843867-8843938)
[»] chr1 (4 HSPs)
chr1 (78-183)||(17537044-17537149)
chr1 (44-176)||(5217240-5217369)
chr1 (46-133)||(5216811-5216898)
chr1 (76-172)||(48518531-48518626)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 263707 - 263570
Alignment:
Q  46 aatattgattaagtcaaaagaagaaaaccataattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagtcc 145  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||  || |||    
T  263707 aatattgatcaagtcaaaagaagaaaatcataattaatattgtgagaattgttaaagtaaatgaggtcacatgattggtaataagaattaaaactaatcc 263608  T
Q  146 attaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  263607 attaaattttaataaaatggagggtgaggatgtggagt 263570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 264302 - 264410
Alignment:
Q  74 cataattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagtccattaaattttgataaaatgaagggtgag 173  Q
    |||||||||||||||| |||| | | ||||| ||||| ||||||||||  || ||||| |||||| |||||||||||| |||||||||||| ||||  ||    
T  264302 cataattaatattgtgtgaat-gattaggtagatgagatcacatgattattagtaagacttaaatctagtccattaaactttgataaaatggagggcaag 264400  T
Q  174 gatgtggagt 183  Q
    ||||||||||    
T  264401 gatgtggagt 264410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 40145002 - 40145083
Alignment:
Q  102 gtaaatgaggtcacatgattggtaataagaattaaatatagtccattaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    ||||||||| ||||||||||  ||||||||||||||| ||||| |||||| || |||||| | |||||||  ||||||||||    
T  40145002 gtaaatgagatcacatgattattaataagaattaaatttagtctattaaaattagataaattaaagggtggagatgtggagt 40145083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 29527083 - 29527220
Alignment:
Q  46 aatattgattaagtcaaaagaagaaaaccataattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagtcc 145  Q
    ||||||||| |||||||||| |||||||||||||||||| || |||||||| ||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  29527083 aatattgatcaagtcaaaagtagaaaaccataattaatactgcgagaattgttaaagtaaatgaggtcacatgattggtaataaaaattaaatctagtcc 29527182  T
Q  146 attaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    |||||||||| |||||||| ||||||| ||||||||||    
T  29527183 attaaattttaataaaatggagggtgacgatgtggagt 29527220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 20123169 - 20123286
Alignment:
Q  66 aagaaaaccataattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagtccattaaattttgataaaatga 165  Q
    ||||||||  ||||||||||||||||||| | |||||| |||||| ||||||||||  ||||||||||||||| ||||||||||||||| |||||||||     
T  20123169 aagaaaacggtaattaatattgtgagaatggttaaggtgaatgagatcacatgattattaataagaattaaatctagtccattaaatttagataaaatgg 20123268  T
Q  166 agggtgaggatgtggagt 183  Q
    ||||||||||||||||||    
T  20123269 agggtgaggatgtggagt 20123286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 4167048 - 4167187
Alignment:
Q  43 attaatattgattaagtcaaaagaagaaaaccataattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatag 142  Q
    ||||||||| ||||| |||||||||| ||| ||||||||||||||||| ||| | | |||||  |||| || |||||||  ||| ||||||||||| |||    
T  4167048 attaatatttattaaatcaaaagaaggaaatcataattaatattgtgaaaat-gattaggtaggtgagatcccatgattattaaaaagaattaaatctag 4167146  T
Q  143 tccattaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  4167147 tccattaaatttagataaaatggagggtgaggatgtggagt 4167187  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 4163480 - 4163396
Alignment:
Q  99 aaggtaaatgaggtcacatgattggtaataagaattaaatatagtccattaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    ||||| |||||||||||||||||  ||||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||    
T  4163480 aaggtgaatgaggtcacatgattattaataagtattaaatctagtccattaaatttagataaaatggagggtgaggatgtggagt 4163396  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 20122756 - 20122618
Alignment:
Q  44 ttaatattgattaagtcaaaagaagaaaaccataattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagt 143  Q
    |||||||| ||||| || ||||||| ||| ||||||||||||||| | ||| | | ||||| ||||| ||| ||||||  ||||||||  ||||| || |    
T  20122756 ttaatattcattaaatctaaagaaggaaatcataattaatattgtaaaaat-gattaggtagatgagatcatatgattattaataagatataaatctaat 20122658  T
Q  144 ccattaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    ||||||||||| ||||||||| ||||||||||| ||||||    
T  20122657 ccattaaatttagataaaatggagggtgaggatctggagt 20122618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 29525252 - 29525146
Alignment:
Q  76 taattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagtccattaaattttgataaaatgaagggtgagga 175  Q
    |||||||||||||| |||| | | ||||| ||||| ||||||||||  || ||||| |||||| |||||||||||| |||||||||||| |||| |||||    
T  29525252 taattaatattgtgtgaat-gattaggtagatgagatcacatgattattagtaagacttaaatctagtccattaaactttgataaaatggagggcgagga 29525154  T
Q  176 tgtggagt 183  Q
    ||||||||    
T  29525153 tgtggagt 29525146  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 24196321 - 24196448
Alignment:
Q  46 aatattgattaagtcaaaagaagaaaaccataattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagtcc 145  Q
    ||||||||| |||||||| |||||||  ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  24196321 aatattgatcaagtcaaa-gaagaaa--cataattaatattgtgagaattgttaaagtaaatgaggtcacatgattggtaataagaattaaatctagtcc 24196417  T
Q  146 attaaattttga-taaaatgaagggtgagga 175  Q
    |||||||||| | ||||||| ||||||||||    
T  24196418 attaaattttaattaaaatggagggtgagga 24196448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 21436135 - 21436272
Alignment:
Q  46 aatattgattaagtcaaaagaagaaaaccataattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagtcc 145  Q
    |||||||||  ||||||| || |||||   |||||||| | |||||| | | ||||||||||| ||||||||||||  ||||||| || |||| ||||||    
T  21436135 aatattgatggagtcaaatgatgaaaattgtaattaatgtggtgagattggttaaggtaaatggggtcacatgattattaataagcatcaaatttagtcc 21436234  T
Q  146 attaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    |||||| || |||||| |||||||||||||||||||||    
T  21436235 attaaaattagataaattgaagggtgaggatgtggagt 21436272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 24195728 - 24195621
Alignment:
Q  76 taattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagtccattaaattttg-ataaaatgaagggtgagg 174  Q
    |||||||||||||| |||| | | ||||| ||||| ||||||||||  || ||||| |||||| |||||||||||| |||| |||||||| |||| ||||    
T  24195728 taattaatattgtgtgaat-gattaggtagatgagatcacatgattattagtaagatttaaatctagtccattaaactttgtataaaatggagggcgagg 24195630  T
Q  175 atgtggagt 183  Q
    |||||||||    
T  24195629 atgtggagt 24195621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 15539934 - 15539875
Alignment:
Q  124 taataagaattaaatatagtccattaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    |||||||| ||||||||| ||||||| ||||  |||||||||||||||||||||||||||    
T  15539934 taataagacttaaatataatccattagatttatataaaatgaagggtgaggatgtggagt 15539875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 21435480 - 21435439
Alignment:
Q  142 gtccattaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    |||| |||||||| ||||||||| ||||||||||||||||||    
T  21435480 gtcctttaaatttagataaaatggagggtgaggatgtggagt 21435439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 33766661 - 33766524
Alignment:
Q  46 aatattgattaagtcaaaagaagaaaaccataattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagtcc 145  Q
    |||||||||  ||||||| || |||||   |||||||| | |||||| | | ||||||||||||||||||||||||  ||||||| || |||||||||||    
T  33766661 aatattgatggagtcaaatgatgaaaattgtaattaatgtggtgagattggttaaggtaaatgaggtcacatgattattaataagcatcaaatatagtcc 33766562  T
Q  146 attaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    |||||| || |||||| |||||||||||||||||||||    
T  33766561 attaaaattagataaattgaagggtgaggatgtggagt 33766524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 10555555 - 10555418
Alignment:
Q  46 aatattgattaagtcaaaagaagaaaaccataattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagtcc 145  Q
    |||||||||  ||||||| || |||||   |||||||| | |||||| | | ||||||||||||||||||||||||  ||||||| || |||| ||||||    
T  10555555 aatattgatggagtcaaatgatgaaaattgtaattaatgtggtgagattggttaaggtaaatgaggtcacatgattattaataagcatcaaatctagtcc 10555456  T
Q  146 attaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    |||||| || |||||| |||||||||||||||||||||    
T  10555455 attaaaattagataaattgaagggtgaggatgtggagt 10555418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 42994623 - 42994516
Alignment:
Q  76 taattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagtccattaaattttgataaaatgaagggtgagga 175  Q
    |||||||| | |||||| | | ||||||||||||||||||||||||  ||||||| || |||| |||||| ||||| || |||||| |||||||||||||    
T  42994623 taattaatgtggtgagattggttaaggtaaatgaggtcacatgattattaataagcatcaaatctagtccgttaaaattagataaattgaagggtgagga 42994524  T
Q  176 tgtggagt 183  Q
    ||||||||    
T  42994523 tgtggagt 42994516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 23244294 - 23244368
Alignment:
Q  109 aggtcacatgattggtaataagaattaaatatagtccattaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    |||||||||||||   |||||| || |||| |||| ||||||| || |||||| |||||||||||||||||||||    
T  23244294 aggtcacatgattatcaataagcatcaaatctagttcattaaaattagataaattgaagggtgaggatgtggagt 23244368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 23237121 - 23237080
Alignment:
Q  142 gtccattaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    ||||||||||||| ||||||||| ||||||||||||||||||    
T  23237121 gtccattaaatttagataaaatggagggtgaggatgtggagt 23237080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 42995306 - 42995347
Alignment:
Q  142 gtccattaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    ||||||||||||| ||||||||| ||||||||||||||||||    
T  42995306 gtccattaaatttagataaaatggagggtgaggatgtggagt 42995347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 33767312 - 33767351
Alignment:
Q  144 ccattaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  33767312 ccattaaatttagataaaatggagggtgaggatgtggagt 33767351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 26234747 - 26234883
Alignment:
Q  46 aatattgattaagtcaaaagaagaaaaccataattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagtcc 145  Q
    |||||||||| ||||||||||| |||||  ||||||||  ||||||| | | |||||| |||||||||||||||||  ||||||||||||||| || |||    
T  26234747 aatattgattgagtcaaaagaa-aaaacggtaattaattatgtgagattagttaaggtgaatgaggtcacatgattattaataagaattaaatctaatcc 26234845  T
Q  146 attaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    |||||||| |||||||||  | ||||||||||||||||    
T  26234846 attaaattctgataaaatagaaggtgaggatgtggagt 26234883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 48 - 183
Target Start/End: Complemental strand, 26234020 - 26233888
Alignment:
Q  48 tattgattaagtcaaaagaagaaaaccataattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagtccat 147  Q
    |||| ||||| |||||||||| ||| ||||||||||||||||| || || | ||||  ||||| || |||||||  ||||||||||||||| ||||||||    
T  26234020 tatttattaaatcaaaagaaggaaatcataattaatattgtga-aaatgattaggt--atgagatcccatgattattaataagaattaaatctagtccat 26233924  T
Q  148 taaattttgataaaatgaagggtgaggatgtggagt 183  Q
    ||||||| ||||||||| ||||||||||||||||||    
T  26233923 taaatttagataaaatggagggtgaggatgtggagt 26233888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 25344970 - 25344885
Alignment:
Q  98 taaggtaaatgaggtcacatgattggtaataagaattaaatatagtccattaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    ||||||||||||||||||||||||  ||||||  || |||| |||||||||||| || |||||| |||||||||||||||||||||    
T  25344970 taaggtaaatgaggtcacatgattattaataaccatcaaatctagtccattaaaattagataaattgaagggtgaggatgtggagt 25344885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 25345577 - 25345615
Alignment:
Q  145 cattaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  25345577 cattaaatttagataaaatggagggtgaggatgtggagt 25345615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 18684489 - 18684346
Alignment:
Q  44 ttaatattgattaagtcaaaagaagaaaaccataattaatattgtgagaattgctaaggtaaatgaggtcacatgat-----tggtaataagaattaaat 138  Q
    |||||||| ||||| || ||||||| ||| ||||||||||||||||| ||| | | ||||| ||||| |||||||||     |  ||||||||  |||||    
T  18684489 ttaatattcattaaatctaaagaaggaaatcataattaatattgtgaaaat-gattaggtagatgagatcacatgatgattattataataagacataaat 18684391  T
Q  139 atagtccattaaattttgataaaatgaagggtgaggatgtggagt 183  Q
     |||| |||||||||| ||||||||| ||||||||||||||||||    
T  18684390 ttagttcattaaatttagataaaatggagggtgaggatgtggagt 18684346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 18730054 - 18729911
Alignment:
Q  44 ttaatattgattaagtcaaaagaagaaaaccataattaatattgtgagaattgctaaggtaaatgaggtcacatgat-----tggtaataagaattaaat 138  Q
    |||||||| ||||| || ||||||| ||| ||||||||||||||||| ||| | | ||||| ||||| |||||||||     |  ||||||||  |||||    
T  18730054 ttaatattcattaaatctaaagaaggaaatcataattaatattgtgaaaat-gattaggtagatgagatcacatgatgattattataataagacataaat 18729956  T
Q  139 atagtccattaaattttgataaaatgaagggtgaggatgtggagt 183  Q
     |||| |||||||||| ||||||||| ||||||||||||||||||    
T  18729955 ttagttcattaaatttagataaaatggagggtgaggatgtggagt 18729911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 8843938 - 8843867
Alignment:
Q  112 tcacatgattggtaataagaattaaatatagtccattaaattttgataaaatgaagggtgaggatgtggagt 183  Q
    ||||||||||  ||||||||||||||| ||||||| ||||||| ||||||||   |||||||||| ||||||    
T  8843938 tcacatgattattaataagaattaaatctagtccactaaatttagataaaatagtgggtgaggatatggagt 8843867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 17537149 - 17537044
Alignment:
Q  78 attaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagtccattaaattttgataaaatgaagggtgaggatg 177  Q
    ||||||||||||||||| | ||||||| ||||| ||| |||||   ||||||||||||||  || | || || ||||  |||||||||||||||||||||    
T  17537149 attaatattgtgagaatggttaaggtagatgagatcatatgataattaataagaattaaacttaatgcaatagatttatataaaatgaagggtgaggatg 17537050  T
Q  178 tggagt 183  Q
    ||||||    
T  17537049 tggagt 17537044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 5217240 - 5217369
Alignment:
Q  44 ttaatattgattaagtcaaaagaagaaaaccataattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagt 143  Q
    |||||||| ||||| |  ||||||| ||| ||||||||||||||||| ||| | | ||||| ||||| ||||  ||||  ||||||||  ||||| ||||    
T  5217240 ttaatattcattaaatttaaagaaggaaatcataattaatattgtgaaaat-gattaggtagatgagatcac--gattattaataagacataaatttagt 5217336  T
Q  144 ccattaaattttgataaaatgaagggtgaggat 176  Q
    |||||| |||| ||||||||| |||||||||||    
T  5217337 ccattatatttagataaaatggagggtgaggat 5217369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 5216898 - 5216811
Alignment:
Q  46 aatattgattaagtcaaaagaagaaaaccataattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaat 133  Q
    |||| ||||| ||||||||| |||||||  ||||||||||||||| ||| | |||||| |||||| |||||| |||  ||||||||||    
T  5216898 aataatgattgagtcaaaagtagaaaacggtaattaatattgtgaaaatggttaaggtgaatgagatcacattattattaataagaat 5216811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 48518531 - 48518626
Alignment:
Q  76 taattaatattgtgagaattgctaaggtaaatgaggtcacatgattggtaataagaattaaatatagtccattaaattttgataaaatgaagggtga 172  Q
    |||||||||||||| |||| | | ||||| ||||| |||||| |||  |||||||| |||||| || |||||||||||| ||||||||  |||||||    
T  48518531 taattaatattgtgtgaat-gattaggtagatgagatcacattattattaataagacttaaatctaatccattaaatttagataaaatagagggtga 48518626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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