View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_69 (Length: 423)
Name: NF9011_low_69
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_69 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 56046110 - 56046504
Alignment:
| Q |
18 |
ataatctacacttttctttttctcgtaagcaatgaggcgaaagcaatgggagtttgaaattttaacatgagtgtttcctatgatggttaccttgcagcaa |
117 |
Q |
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| T |
56046110 |
ataatctacacttttctttttctcgtaagcaatgaggcgaaagcaataggagtttgaaattttaacatgagtgtttcctatgatggttaccttgcagcaa |
56046209 |
T |
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| Q |
118 |
cctggatatgacattattgcacagttcatgatcgggtatctccttcctggaaaaccaattgcaaacttgctctttaagatttatgggagaatcagcaccg |
217 |
Q |
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| T |
56046210 |
cctggatatgacattattgcacagttcatgatcgggtatctccttcctggaaaaccaattgcaaacttgctctttaagatttatgggagaatcagcaccg |
56046309 |
T |
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| Q |
218 |
tccatgcactctctttcttgcaagatctcaaacttgggcactacatgaaaattcccccgcgatgcatgtatacagcacaggtatttttagctcagaatct |
317 |
Q |
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| T |
56046310 |
tccatgcactctctttcttgcaagatcttaaacttgggcactacatgaaaattcccccgcgatgcatgtatacagcacaggtatttttagctcagaatct |
56046409 |
T |
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| Q |
318 |
cctagtttgaactcttttgttatcc---ttttttctctctttcttgctagttaatgattatttattttgaatttccaaatagctggtgggaacac |
409 |
Q |
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| T |
56046410 |
cctagtttgaactcttttgttatcctttttttttctttctttcttgctagttaatgattatttattttgaatttccaaatagctggtgggaacac |
56046504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 58 - 271
Target Start/End: Original strand, 55707466 - 55707670
Alignment:
| Q |
58 |
aagcaatgggagtttgaaattttaacatgagtgtttcctatgatggttaccttgcagcaacctggatatgacattattgcacagttcatgatcgggtatc |
157 |
Q |
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| T |
55707466 |
aagcaataggagtttaaaattttaacatgagcgtttcctgtg---------ttgcagcaaccgggatatgacattgtagcacagttagtgattggatatc |
55707556 |
T |
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| Q |
158 |
tccttcctggaaaaccaattgcaaacttgctctttaagatttatgggagaatcagcaccgtccatgcactctctttcttgcaagatctcaaacttgggca |
257 |
Q |
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||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||| ||||| | |||||||||||| ||||||||||||| |||| |
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| T |
55707557 |
tccttcctggaaatccaatagcaaacttgctcttccagatttatgggagaatcaacactgtccacacgctctctttcttgtcagatctcaaacttaggca |
55707656 |
T |
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| Q |
258 |
ctacatgaaaattc |
271 |
Q |
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| T |
55707657 |
ctacatgaaaattc |
55707670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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