View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_73 (Length: 412)
Name: NF9011_low_73
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_73 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 46 - 389
Target Start/End: Original strand, 49042253 - 49042596
Alignment:
| Q |
46 |
cgtagtacagaccaaagaggaagagtagaaagattgaaccgatggctgtatcggtgtcaagttggacggtgtgttcgagtaagagttgtgagagacggtg |
145 |
Q |
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| T |
49042253 |
cgtagtacagaccaaaaaggaagagtagaaagattgaaccgatggctgtatcggtgtcaagttggacggtgtgttcgagtaagagttgtgagagacggtg |
49042352 |
T |
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| Q |
146 |
gagttttagatcggtgagttggaactgaacggtgaggaagagtaagagagggacgacgaatgtgaaaatgagaatggttgtggcattgcatgaatagcca |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49042353 |
gagttttagatcggtgagttggaactgaacggtgaggaagagtaagagagggacgacgaatgtgaaaatgagaatggttgtggcattgcatgaatagcca |
49042452 |
T |
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| Q |
246 |
taacctaactttacgtacttgagtttcaccgtttgtagaaaatccggtaaacgtcgccggattttgataacggcggaggttgaatctttgaaatccatct |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49042453 |
taacctaactttacgtacttgagtttcaccgtttgtagaaaatccggtaaacgtcgccggattttgataacggcggaggttgaatctttgaaatccatct |
49042552 |
T |
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| Q |
346 |
ccgccgttagtctttctttatccatgtctatgctgttgcgaccc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49042553 |
ccgccgttagtctttctttatccatgtctatgctgttgcgaccc |
49042596 |
T |
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