View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9011_low_79 (Length: 404)
Name: NF9011_low_79
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_79 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 137 - 301
Target Start/End: Complemental strand, 50650711 - 50650546
Alignment:
| Q |
137 |
ccactcttcatatatacaaaaatacattaaaacacggagaaaatggtaaattcaggaatatatttttcccgccttaaagaacaaaatttcggatcccgct |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50650711 |
ccactcttcatatatacaaaaatacattaaaacatggagaaaatggtaaattcaggaatatatttttcccgccttaaagaacaaaatttcggatcccgct |
50650612 |
T |
|
| Q |
237 |
tttattatttttcgtcttttccgctctccatatacaaaatatacttttt-aagggtttctcttccg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50650611 |
tttattatttttcgtcttttccgctctccatatacaaaatatactttttaaagggtttctcttccg |
50650546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 303 - 375
Target Start/End: Complemental strand, 50649989 - 50649917
Alignment:
| Q |
303 |
tccccccttttttctatttacttatcgtgtttgttgaaagtcctcaaagactttgtctggcaaatcgttattt |
375 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50649989 |
tccccccttttttctatgtacttatcgtgtttgttgaaagtcctcaaagactttgtctggcaaatcgttattt |
50649917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University