View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_80 (Length: 386)
Name: NF9011_low_80
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_80 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18719983 - 18720203
Alignment:
| Q |
1 |
cctgtgaaaagtgattcaacaattccaatctgaatcataattaatgagattaataaaaatttaactacatccaataatattcaaaaactttttcattaac |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18719983 |
cctgtgaaaagtaattcaacaattccaatctgaatcataattaatgagattaataaaaatttaactacatccaataatattcaaaaactttttcattaac |
18720082 |
T |
|
| Q |
101 |
caataaatagtgtttatgctattaactttttcactcaaacgatgcattcaatccacatagcacaataagtaaataaatagaaggggagaacacgcctaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
18720083 |
caataaatagtgtttatgctattaactttttcactcaaacgatgcattcaatccacatagcacaataggtaaataaatagaaggggagaacatgcctaga |
18720182 |
T |
|
| Q |
201 |
ttttcttaatctttataagca |
221 |
Q |
| |
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|| |||||||||||||||||| |
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| T |
18720183 |
ttctcttaatctttataagca |
18720203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18675460 - 18675672
Alignment:
| Q |
1 |
cctgtgaaaagtgattcaacaattccaatctgaatcataattaatgagattaataaaaatttaactacatccaataatattcaaaaactttttcattaac |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || | |||| |
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| T |
18675460 |
cctgtgaaaagtaattcaacaattccaatctgaatcataattaatgagattaataaaaatttaactacatccaataa--------agctatt--aataac |
18675549 |
T |
|
| Q |
101 |
caataaatagtgtttatgctattaactttttcactcaaacgatgcattcaatccacatag--cacaataagtaaataaatagaaggggagaacacgccta |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18675550 |
caataaatagtgtttatgctattaactttttcactcaaacgatgcattcaatccacatagtacacaataagtaaataaatagaaggggagaacacgccta |
18675649 |
T |
|
| Q |
199 |
gattttcttaatctttataagca |
221 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
18675650 |
gattttcttaatctttataagca |
18675672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 219 - 383
Target Start/End: Original strand, 18720258 - 18720422
Alignment:
| Q |
219 |
gcaaactctgagaacctttatttcgatattttgaacaaaacaaaattggtaaaagttatgtgtaacaatgttcagttataatatctaaaatgtccatcaa |
318 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18720258 |
gcaaactctgagaacctttatttcgacattttgaacaaaacaaaattggtaaaagttatgtgtaacaatgttcagttataatttctaaaatgtccatcaa |
18720357 |
T |
|
| Q |
319 |
tcaagctggataaaaaacatccttcctatgaaataccgacacagacacgaacaccaaactcgaca |
383 |
Q |
| |
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| T |
18720358 |
tcaagctggataaaaaacatccttcctatgaaataccgacaaagacacggacaccagactcgaca |
18720422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 219 - 383
Target Start/End: Original strand, 18675727 - 18675892
Alignment:
| Q |
219 |
gcaaactctgagaacctttatttcgatattttgaacaaaacaaaattggtaaaagttatgtgtaacaatgttcagttataatatctaaaatgtccatcaa |
318 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18675727 |
gcaaactctgagaacctttatttcgacattttgaacaaaacaaaattggtaaaagttatgtgtaacaatgttcagttataatttctaaaatgtccatcaa |
18675826 |
T |
|
| Q |
319 |
tcaagctggat-aaaaaacatccttcctatgaaataccgacacagacacgaacaccaaactcgaca |
383 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
18675827 |
tcaagctggataaaaaaacatccttcctatgaaataccgacacagacacggacaccagactcgaca |
18675892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 24 - 215
Target Start/End: Original strand, 18651372 - 18651570
Alignment:
| Q |
24 |
tccaatctgaatcataattaatgagattaataa-aaatttaactacatccaataatattcaaaaactttttcattaaccaataaata----gtgtttat- |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18651372 |
tccaatctgaatcataattaatgagattaatagtaaatttaacttcatccaataatattcaaaaactttttcattaaccaataaatttactgtgtttaaa |
18651471 |
T |
|
| Q |
118 |
-gctattaactttttcactcaaacgatgcattcaatccacatagcacaataagtaaataaatagaaggggagaacacgcctagattttcttaatcttta |
215 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18651472 |
ggctattaactttttcactcaaaagatgcattcaatccatatagaacaataagtacataaatagaaggggagaacaagcctagattttcttaatcttta |
18651570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 24 - 215
Target Start/End: Original strand, 18727424 - 18727616
Alignment:
| Q |
24 |
tccaatctgaatcataattaatgagattaataa-aaatttaactacatccaataatattcaaaaactttttcattaaccaataaata----gtgtttatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
18727424 |
tccaatctgaatcataattaatgagattaatagtaaacttaacttcatccaataatattcaaaaactttttcattaaccaataaatttactgtgtttagg |
18727523 |
T |
|
| Q |
119 |
ctattaactttttcactcaaacgatgcattcaatccacatagcacaataagtaaataaatagaaggggagaacacgcctagattttcttaatcttta |
215 |
Q |
| |
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||||||||||||||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18727524 |
ctattaactttttcactcaaaagatgcattcagtccacacagcacaataag----taaatagaaggggagaacaagcctagattttcttaatcttta |
18727616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 252 - 383
Target Start/End: Original strand, 18651709 - 18651839
Alignment:
| Q |
252 |
aacaaaacaaaattggtaaaagttatgtgtaacaatgttcagttataatatctaaaatgtccatcaatcaagctggataaaaaacatccttcctatgaaa |
351 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||| |||||||||| ||||||| ||||||||| |||||||||||| |
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| T |
18651709 |
aacaaaacaaaattggtaaaaattatgcgtaacaatgttaagttataatttctaaaatttccatcaatcgagctgga-aaaaaacatgcttcctatgaaa |
18651807 |
T |
|
| Q |
352 |
taccgacacagacacgaacaccaaactcgaca |
383 |
Q |
| |
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|||||||||||||||| |||||| |||||||| |
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| T |
18651808 |
taccgacacagacacggacaccagactcgaca |
18651839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 274 - 383
Target Start/End: Original strand, 18727747 - 18727858
Alignment:
| Q |
274 |
ttatgtgtaacaatgtt--cagttataatatctaaaatgtccatcaatcaagctggataaaaaacatccttcctatgaaataccgacacagacacgaaca |
371 |
Q |
| |
|
||||||||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18727747 |
ttatgtgtaacaatgttttcaattataatttctaaaatttccatcaatcaagctggataaaaaacatccttcctatgaaataccgacacagacacggaca |
18727846 |
T |
|
| Q |
372 |
ccaaactcgaca |
383 |
Q |
| |
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|||||||||||| |
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| T |
18727847 |
ccaaactcgaca |
18727858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 26660239 - 26660158
Alignment:
| Q |
76 |
aatattcaaaaactttttcattaaccaataa-atagtgtttatgctattaactttttcactcaaacgatgcattcaatccac |
156 |
Q |
| |
|
|||||||||||| || ||||||||||| ||| | ||||||| |||| ||||| ||||||||||| ||| ||||||||||| |
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|
| T |
26660239 |
aatattcaaaaatttattcattaaccattaatactgtgtttaggctactaactatttcactcaaaagatcgattcaatccac |
26660158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 26766210 - 26766129
Alignment:
| Q |
76 |
aatattcaaaaactttttcattaaccaataa-atagtgtttatgctattaactttttcactcaaacgatgcattcaatccac |
156 |
Q |
| |
|
|||||||||||| || ||||||||||| ||| | ||||||| |||| ||||| ||||||||||| ||| ||||||||||| |
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|
| T |
26766210 |
aatattcaaaaatttattcattaaccattaatactgtgtttaggctactaactatttcactcaaaagatcgattcaatccac |
26766129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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