View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9011_low_83 (Length: 381)
Name: NF9011_low_83
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_83 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 139 - 365
Target Start/End: Original strand, 976944 - 977170
Alignment:
| Q |
139 |
tccggcaacgatctctaagcatgtcgaacttggctgtgactgaagaactcgaatccaggttatcaactccagtaaaaatttcagagtaaattttaatcat |
238 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
976944 |
tccggcaacgatctctaagcatttcgaacttggctgtgactgaagaactcgaatccagcttatcaactccaggaaaaatttcagagtaaattttaatcat |
977043 |
T |
|
| Q |
239 |
tgcaattttaattatgtcggcagcagatccctgggaggtagagggaaggaaaacaatattaacatgaatactgacagcttggagggaaatatatcctgat |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
977044 |
tgcaattttaattatgtcggcagcagatccctgggaggtagagggaaggaaaacaatattaacatgaatactgacagcttggagggaaacatatcctgat |
977143 |
T |
|
| Q |
339 |
tttgaagagaaagaaaaaagggtatta |
365 |
Q |
| |
|
||||||||||| ||||||||||||||| |
|
|
| T |
977144 |
tttgaagagaacgaaaaaagggtatta |
977170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 976816 - 976879
Alignment:
| Q |
9 |
cacagagggatcaacttccagcactaattcatcgtgtacctagttaacatttactgaaatgatt |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
976816 |
cacagagggatcaacttccagcactaattcatcgtgtacctagttaacatatactgaaatgatt |
976879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University