View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_84 (Length: 355)
Name: NF9011_low_84
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_84 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 6496762 - 6496424
Alignment:
| Q |
17 |
actttaaatgggaatggatttctacaagatgataaatggggtggcattgttaccatacaagggtctgttgattctaacgctgattccggtttcggaatct |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6496762 |
actttaaatgggaatggatttctacaagatgataaatggggtggcattgttaccatacaagggtctgttgattctaatgctgattccggtttcggaatct |
6496663 |
T |
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| Q |
117 |
ataatgatcatgctgatcacttaggatactttctttatggaattgctgttcttactaagattgacactgcatggggtgagaaatataagtctgcggccta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6496662 |
ataatgatcatgctgatcacttaggatactttctttatggaattgctgttcttactaagattgacactgcatggggtgagaaatataagtctgcggccta |
6496563 |
T |
|
| Q |
217 |
ttcacttatgaaagattttatgaacttgaactcgggaccagactccgatgacacacgtttaagatattatgatctttatcatggccacaatcatagtcca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6496562 |
ttcacttatgaaagattttatgaacttgaactcgggaccagactccgatgacacacgtttaagatattatgatctttatcatggccacaatcatagtcca |
6496463 |
T |
|
| Q |
317 |
gggttaattcagtataaagatggaagaaaccataagagc |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
6496462 |
gggttaattcagtataaagatggaagaaaccataagagc |
6496424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 6461910 - 6462248
Alignment:
| Q |
17 |
actttaaatgggaatggatttctacaagatgataaatggggtggcattgttaccatacaagggtctgttgattctaacgctgattccggtttcggaatct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||| |||||||||||||| | |
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| T |
6461910 |
actttaaatgggaatggatttctacaagatgataaatggggtggcattgttaccgaacaagggtctatggattctaacgctgactccggtttcggaattt |
6462009 |
T |
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| Q |
117 |
ataatgatcatgctgatcacttaggatactttctttatggaattgctgttcttactaagattgacactgcatggggtgagaaatataagtctgcggccta |
216 |
Q |
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||| |||||| |||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
6462010 |
atagtgatcaccctgatcacttgggatactttctttatggaattgcagttcttacaaagattgacactgcatggggtgagaaatacaagtcgaaggccta |
6462109 |
T |
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| Q |
217 |
ttcacttatgaaagattttatgaacttgaactcgggaccagactccgatgacacacgtttaagatattatgatctttatcatggccacaatcatagtcca |
316 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||| |||||||| ||| |||||| || || |||| |
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| T |
6462110 |
ttcacttatgaaagattttatgaacttggactcaggaccagactccgatgacccacgtcaaagagattatgattacgttcaaggccaccattatgctcca |
6462209 |
T |
|
| Q |
317 |
gggttaattcagtataaagatggaagaaaccataagagc |
355 |
Q |
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||||||||||| |||||||||||||||||||||||||| |
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| T |
6462210 |
gggttaattcaacataaagatggaagaaaccataagagc |
6462248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 6465422 - 6465259
Alignment:
| Q |
17 |
actttaaatgggaatggatttctacaagatgataaatggggtggcattgttaccatacaagggtctgttgattctaacgctgattccggtttcggaatct |
116 |
Q |
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||||| ||||| ||||||||||| | |||| |||||||| || |||||||||| |||||||||| |||| || ||||||| || |||||| | | |
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| T |
6465422 |
acttttaatggaaatggatttctctatgatggaaaatggggaggaattgttaccaaacaagggtctaatgatactggtgctgattttggattcggagttt |
6465323 |
T |
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| Q |
117 |
ataatgatcatgctgatcacttaggatactttctttatggaattgctgttcttactaagattga |
180 |
Q |
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| T |
6465322 |
ataatgatcatcattatcatttaggatactttctctatggaattgctgtgcttgcaaagattga |
6465259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 6473210 - 6473360
Alignment:
| Q |
95 |
gctgattccggtttcggaatctataatgatcatgctgatcacttaggatactttctttatggaattgctgttcttactaagattgacactgcatggggtg |
194 |
Q |
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||||||| ||| |||||||| |||||||||||| | |||| ||||| |||||||| ||||||||||| || ||| |||||||||| | | |||||| |
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| T |
6473210 |
gctgatttcgggttcggaatttataatgatcatcattatcatttaggttactttctctatggaattgcagtgcttgctaagattgatccagtttggggta |
6473309 |
T |
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| Q |
195 |
agaaatataagtctgcggcctattcacttatgaaagattttatgaacttga |
245 |
Q |
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||||||||||| || |||||| |||| ||| |||||||||||| ||||| |
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| T |
6473310 |
agaaatataagcctcaagcctatgcactcatggaagattttatgaccttga |
6473360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 6526371 - 6526298
Alignment:
| Q |
107 |
ttcggaatctataatgatcatgctgatcacttaggatactttctttatggaattgctgttcttactaagattga |
180 |
Q |
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|||||| | |||||||||||| | |||| |||||||||||||| ||||||||||| || ||| |||||||||| |
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| T |
6526371 |
ttcggagtttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgctaagattga |
6526298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 6516295 - 6516422
Alignment:
| Q |
116 |
tataatgatcatgctgatcacttaggatactttctttatggaattgctgttcttactaagattgacactgcatggggtgagaaatataagtctgcggcct |
215 |
Q |
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|||||||||||| | |||| |||||||| ||||||||||||||||| || ||| ||||||||| | ||||||||| ||| |||||| ||| |
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| T |
6516295 |
tataatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatccagcatggggtaggaagtataagaaacaatcct |
6516394 |
T |
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| Q |
216 |
attcacttatgaaagattttatgaactt |
243 |
Q |
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||||||||||| |||| ||||||||||| |
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| T |
6516395 |
attcacttatggaagactttatgaactt |
6516422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 6457372 - 6457299
Alignment:
| Q |
107 |
ttcggaatctataatgatcatgctgatcacttaggatactttctttatggaattgctgttcttactaagattga |
180 |
Q |
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||||| || |||||||||||| | |||| |||||||||||||| ||||||||||| || ||| | |||||||| |
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| T |
6457372 |
ttcggtatttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgcaaagattga |
6457299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 3754004 - 3754080
Alignment:
| Q |
104 |
ggtttcggaatctataatgatcatgctgatcacttaggatactttctttatggaattgctgttcttactaagattga |
180 |
Q |
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||||| ||||| |||||||||||| | |||| ||||| || |||||||||||||||||||||||| | |||||||| |
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| T |
3754004 |
ggttttggaatttataatgatcatcattatcatttaggttattttctttatggaattgctgttcttgcaaagattga |
3754080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 35244309 - 35244342
Alignment:
| Q |
212 |
gcctattcacttatgaaagattttatgaacttga |
245 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
35244309 |
gcctattcactcatgaaagattttatgaacttga |
35244342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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