View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_90 (Length: 344)
Name: NF9011_low_90
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_90 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 328
Target Start/End: Complemental strand, 43377233 - 43376925
Alignment:
| Q |
20 |
attgttccaattttgaactgctcattgtaacacatcaatgctttgcctatagtaacgaggaacaccaaggaatgaacgtccatcaggaatatcactatat |
119 |
Q |
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| T |
43377233 |
attgttccaattttgaactgctctttgtaacacatcaatgctatgcctatagtaacgaggaacaccaaggaatgaacgtccatcaggaatatcactatat |
43377134 |
T |
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| Q |
120 |
tgaacatcagatattaatccaaatgaaaagagaggttgtttgtgatcatcatgtgcattttctaaacaactttctgaacccatggtgtttgtacctaatt |
219 |
Q |
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| T |
43377133 |
tgaacatcagatattaatccaaatgaaaagagaggttgtttgtgatcatcatgtgcattttctaaacaactttctgaacccatggtgtttgtacctaatt |
43377034 |
T |
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| Q |
220 |
tccacaagcacatcacctattggaaatgtaacaaacgtcatcaaaataggacttttccatgtacattcaatgcnnnnnnntatacatcaatgcaacacta |
319 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
43377033 |
tccacaagcagatcacctattggaaatgtaacaaacgtcatcaaaataggacttttccatgtacattcaatgcaaaaaaatatacatcaatgtaacacta |
43376934 |
T |
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| Q |
320 |
tgaaacatt |
328 |
Q |
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| T |
43376933 |
tgaaacatt |
43376925 |
T |
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