View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9011_low_93 (Length: 335)
Name: NF9011_low_93
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_93 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 125 - 320
Target Start/End: Complemental strand, 51864560 - 51864350
Alignment:
| Q |
125 |
gacctcttatacttagccgcctagaatttgataaaagatatgttagatgccaaattccttttttctttctcattgtctttaaatcaaggtggttggcacg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51864560 |
gacctcttatacttagccgcctagaatttgataaaagatatgttagatgccaaattccttttttctttctcattgtctttaaatcaaggtggttggcacg |
51864461 |
T |
|
| Q |
225 |
atcgaa----------------ctcaatgaagcaatttgattggattctcaattttacaaatttgattatgagtttaatagaaaagtagaaacattacat |
308 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
51864460 |
atcgaatcaacctctgattcatctgaatgaagcaatttgattggattctcaattttacaaatttgattatgagtttaatag-aaagtagaaacattacat |
51864362 |
T |
|
| Q |
309 |
ccaattttaatt |
320 |
Q |
| |
|
|||||||||||| |
|
|
| T |
51864361 |
ccaattttaatt |
51864350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 51864667 - 51864600
Alignment:
| Q |
18 |
ataatgtccaacggtgatacctaagctacccaaatttcaattcaatgtattaaaattgtactaccttg |
85 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51864667 |
ataatgtccaacggtgattcctaagctatccaaatttcaattcaatgtattaaaattgtactaccttg |
51864600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University