View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9011_low_99 (Length: 319)
Name: NF9011_low_99
Description: NF9011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9011_low_99 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 5140368 - 5140056
Alignment:
| Q |
13 |
attatacttgagctttgacatggtttagaaggaacattttaatcatgttatagtggaaaatgtaattaaataccaaaattgtcttagatgttgttcaaat |
112 |
Q |
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| T |
5140368 |
attatacttgagctttgacatggtttagaaggaacattttaatcatattatagtggaaaatataattaagtaccaaaattgtcttagatgttgttcaaat |
5140269 |
T |
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| Q |
113 |
atcactannnnnnnnc--ttttctgatnnnnnnnnnnttaa-taagaatgtgtatgaaaaataaaagttgttgaattgctcnnnnnnnnnnnnta---tt |
206 |
Q |
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| T |
5140268 |
atcactatttttttttctttttctgataaaaaaaaaattaaataagaatgtgtatgaaaaataaaagttgttgaattgctcaaaaaaaaaaaaaaaatta |
5140169 |
T |
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| Q |
207 |
gttgaaatatagttggtaaaaattcaatcttgatgtgagcataaccaaaacacacgcagtataccaaaaccatcaaacttatccctatgacagacacaac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5140168 |
gttgaaatatagttggtaaaaattcaatcttgatgtgagcataaccaaaacacacgcagtataccaaaaccatcaaacttatccctatgacagacacaac |
5140069 |
T |
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| Q |
307 |
gaacaaaactgtc |
319 |
Q |
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||||||||||||| |
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| T |
5140068 |
gaacaaaactgtc |
5140056 |
T |
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