View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9012_high_2 (Length: 347)

Name: NF9012_high_2
Description: NF9012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9012_high_2
NF9012_high_2
[»] chr8 (39 HSPs)
chr8 (1-330)||(37600910-37601243)
chr8 (220-330)||(25198263-25198373)
chr8 (234-330)||(25185018-25185114)
chr8 (221-330)||(24512189-24512298)
chr8 (234-330)||(41086963-41087058)
chr8 (234-331)||(37956109-37956206)
chr8 (206-330)||(39543682-39543809)
chr8 (242-330)||(14846943-14847031)
chr8 (234-328)||(16002747-16002841)
chr8 (237-331)||(26878749-26878843)
chr8 (236-330)||(37141716-37141810)
chr8 (221-330)||(40337213-40337322)
chr8 (237-330)||(40602063-40602156)
chr8 (242-330)||(43980605-43980693)
chr8 (237-330)||(40517734-40517824)
chr8 (236-330)||(7772502-7772596)
chr8 (237-330)||(24276579-24276670)
chr8 (237-330)||(24962387-24962480)
chr8 (242-330)||(34882666-34882754)
chr8 (236-303)||(4273957-4274024)
chr8 (221-283)||(1769516-1769578)
chr8 (221-330)||(38773370-38773480)
chr8 (242-328)||(40790785-40790870)
chr8 (242-303)||(57237-57298)
chr8 (237-330)||(885453-885545)
chr8 (237-330)||(2562752-2562845)
chr8 (241-330)||(38761380-38761469)
chr8 (242-330)||(14577674-14577762)
chr8 (250-326)||(14739433-14739509)
chr8 (242-330)||(31673593-31673680)
chr8 (242-330)||(45185289-45185377)
chr8 (235-330)||(38770209-38770304)
chr8 (245-330)||(3006803-3006888)
chr8 (237-330)||(31746427-31746520)
chr8 (237-330)||(36437492-36437585)
chr8 (241-330)||(38203014-38203103)
chr8 (242-330)||(1177178-1177265)
chr8 (242-330)||(3113555-3113643)
chr8 (235-303)||(16644085-16644153)
[»] chr3 (42 HSPs)
chr3 (221-330)||(40645648-40645757)
chr3 (221-330)||(30476015-30476124)
chr3 (242-330)||(13084381-13084469)
chr3 (243-330)||(41825160-41825247)
chr3 (237-331)||(46435752-46435846)
chr3 (237-331)||(31531447-31531541)
chr3 (232-330)||(41727261-41727359)
chr3 (237-330)||(26517238-26517331)
chr3 (221-330)||(29676762-29676871)
chr3 (242-330)||(20945323-20945411)
chr3 (242-330)||(29645353-29645441)
chr3 (242-330)||(50363022-50363110)
chr3 (239-330)||(41308799-41308890)
chr3 (221-330)||(12077766-12077875)
chr3 (237-330)||(14645912-14646005)
chr3 (242-331)||(42891414-42891503)
chr3 (242-330)||(11140700-11140788)
chr3 (242-330)||(22659575-22659663)
chr3 (242-330)||(31819401-31819489)
chr3 (242-330)||(46048517-46048605)
chr3 (220-327)||(26998868-26998975)
chr3 (220-330)||(27638100-27638210)
chr3 (237-330)||(26121322-26121415)
chr3 (258-330)||(29611845-29611917)
chr3 (242-330)||(37729052-37729140)
chr3 (242-330)||(41739996-41740084)
chr3 (235-330)||(43187116-43187211)
chr3 (237-330)||(11388111-11388204)
chr3 (242-331)||(11393917-11394006)
chr3 (257-330)||(28477395-28477468)
chr3 (241-330)||(31474418-31474507)
chr3 (242-330)||(26043014-26043102)
chr3 (242-330)||(51263077-51263165)
chr3 (243-330)||(27047201-27047288)
chr3 (243-330)||(44338078-44338164)
chr3 (227-301)||(53717578-53717652)
chr3 (243-288)||(5504607-5504652)
chr3 (242-331)||(42010863-42010952)
chr3 (242-330)||(44083621-44083710)
chr3 (237-330)||(52325526-52325619)
chr3 (278-330)||(21932957-21933009)
chr3 (258-330)||(39617273-39617345)
[»] chr4 (41 HSPs)
chr4 (221-330)||(5448637-5448746)
chr4 (221-330)||(25477200-25477309)
chr4 (206-330)||(52225979-52226103)
chr4 (236-324)||(16070421-16070509)
chr4 (232-330)||(39237610-39237708)
chr4 (237-330)||(28116526-28116619)
chr4 (206-330)||(48472516-48472641)
chr4 (206-327)||(52552535-52552656)
chr4 (206-330)||(20262415-20262539)
chr4 (237-330)||(30153243-30153336)
chr4 (221-330)||(54438485-54438594)
chr4 (234-330)||(5536485-5536581)
chr4 (241-330)||(50782773-50782862)
chr4 (237-330)||(52198749-52198842)
chr4 (242-330)||(14602676-14602764)
chr4 (242-330)||(37625146-37625234)
chr4 (235-330)||(46729295-46729389)
chr4 (240-330)||(33246518-33246608)
chr4 (237-330)||(12624687-12624780)
chr4 (237-330)||(22750863-22750956)
chr4 (221-330)||(32236806-32236915)
chr4 (245-330)||(34543701-34543786)
chr4 (237-330)||(37175043-37175135)
chr4 (255-303)||(54359693-54359741)
chr4 (242-328)||(41945796-41945881)
chr4 (234-303)||(24072755-24072824)
chr4 (237-330)||(29584885-29584978)
chr4 (242-303)||(51787767-51787828)
chr4 (242-330)||(5932883-5932970)
chr4 (242-330)||(13096563-13096650)
chr4 (242-330)||(19654424-19654512)
chr4 (242-330)||(38136351-38136439)
chr4 (242-330)||(41920059-41920147)
chr4 (242-330)||(43509079-43509165)
chr4 (242-329)||(31486484-31486571)
chr4 (234-272)||(43800786-43800824)
chr4 (242-296)||(50438892-50438946)
chr4 (237-330)||(20291331-20291424)
chr4 (290-330)||(7002227-7002267)
chr4 (243-330)||(39197055-39197143)
chr4 (234-274)||(56217100-56217140)
[»] chr1 (51 HSPs)
chr1 (221-330)||(5085109-5085218)
chr1 (232-330)||(25269362-25269460)
chr1 (237-330)||(30898583-30898676)
chr1 (221-330)||(34696903-34697012)
chr1 (232-330)||(16582518-16582616)
chr1 (232-330)||(33231825-33231923)
chr1 (206-330)||(3143362-3143486)
chr1 (235-330)||(8877760-8877855)
chr1 (247-330)||(28723673-28723756)
chr1 (221-330)||(32047416-32047525)
chr1 (234-331)||(44395522-44395619)
chr1 (221-330)||(48721888-48721998)
chr1 (237-330)||(20564765-20564858)
chr1 (242-327)||(44335284-44335369)
chr1 (250-330)||(16395568-16395648)
chr1 (206-330)||(29140674-29140798)
chr1 (221-288)||(10160693-10160760)
chr1 (237-303)||(27531089-27531155)
chr1 (234-300)||(28334265-28334331)
chr1 (235-329)||(30336047-30336141)
chr1 (237-326)||(2342894-2342983)
chr1 (237-330)||(8984681-8984774)
chr1 (237-330)||(13723498-13723591)
chr1 (237-330)||(15512801-15512894)
chr1 (237-330)||(24414990-24415083)
chr1 (237-330)||(28948984-28949077)
chr1 (242-330)||(38680470-38680558)
chr1 (221-328)||(5322045-5322152)
chr1 (237-328)||(23982614-23982705)
chr1 (243-330)||(31807992-31808079)
chr1 (235-330)||(36084958-36085053)
chr1 (245-331)||(13352832-13352918)
chr1 (237-330)||(4813482-4813575)
chr1 (237-330)||(15179400-15179493)
chr1 (242-331)||(46495304-46495393)
chr1 (237-330)||(50692399-50692492)
chr1 (242-330)||(25258325-25258413)
chr1 (242-330)||(34102331-34102419)
chr1 (237-330)||(52141195-52141290)
chr1 (221-272)||(29302527-29302578)
chr1 (234-296)||(12845040-12845102)
chr1 (206-330)||(44652881-44653002)
chr1 (241-330)||(47643536-47643623)
chr1 (237-330)||(31305308-31305401)
chr1 (221-302)||(35001318-35001399)
chr1 (237-330)||(41737115-41737208)
chr1 (236-331)||(3831038-3831131)
chr1 (242-330)||(10842324-10842410)
chr1 (242-330)||(32152153-32152241)
chr1 (242-330)||(44163227-44163315)
chr1 (250-330)||(51996958-51997038)
[»] chr7 (35 HSPs)
chr7 (221-328)||(4089523-4089630)
chr7 (221-330)||(36116296-36116405)
chr7 (234-330)||(37673725-37673821)
chr7 (235-330)||(1324697-1324792)
chr7 (236-330)||(48610157-48610251)
chr7 (237-330)||(20123441-20123534)
chr7 (237-330)||(26632837-26632930)
chr7 (232-330)||(18122063-18122161)
chr7 (242-330)||(10685081-10685169)
chr7 (242-330)||(25750364-25750452)
chr7 (242-330)||(37048031-37048119)
chr7 (235-330)||(43465164-43465260)
chr7 (234-330)||(49100659-49100755)
chr7 (221-324)||(36726200-36726303)
chr7 (237-324)||(48193606-48193693)
chr7 (221-324)||(48767539-48767642)
chr7 (237-330)||(10595120-10595211)
chr7 (242-328)||(37491642-37491728)
chr7 (237-330)||(21388233-21388326)
chr7 (241-330)||(40263706-40263795)
chr7 (242-330)||(2276598-2276686)
chr7 (242-330)||(21809668-21809756)
chr7 (237-313)||(29636078-29636154)
chr7 (242-330)||(6376154-6376242)
chr7 (242-330)||(21801077-21801165)
chr7 (242-330)||(27213483-27213571)
chr7 (234-330)||(40211298-40211394)
chr7 (242-330)||(46783862-46783950)
chr7 (236-330)||(35128376-35128468)
chr7 (241-328)||(40740945-40741032)
chr7 (234-296)||(25098963-25099025)
chr7 (232-330)||(35960364-35960462)
chr7 (237-330)||(23876028-23876121)
chr7 (242-331)||(28663752-28663840)
chr7 (237-330)||(33181286-33181379)
[»] chr2 (34 HSPs)
chr2 (232-330)||(9718193-9718291)
chr2 (234-330)||(8065093-8065189)
chr2 (242-330)||(44274688-44274776)
chr2 (221-330)||(17250982-17251091)
chr2 (209-330)||(31644463-31644584)
chr2 (242-330)||(41665706-41665794)
chr2 (237-331)||(28264971-28265065)
chr2 (235-329)||(35241730-35241824)
chr2 (237-330)||(45214716-45214809)
chr2 (202-330)||(44424551-44424679)
chr2 (241-330)||(28733820-28733907)
chr2 (232-330)||(34329988-34330086)
chr2 (222-303)||(1246461-1246542)
chr2 (206-303)||(15851491-15851588)
chr2 (237-330)||(17663615-17663708)
chr2 (237-330)||(27297568-27297661)
chr2 (241-330)||(3237716-3237807)
chr2 (243-303)||(13534411-13534471)
chr2 (242-330)||(24774861-24774949)
chr2 (251-331)||(25731206-25731286)
chr2 (237-328)||(11459144-11459235)
chr2 (240-330)||(37355030-37355120)
chr2 (237-330)||(26512062-26512155)
chr2 (242-330)||(4398545-4398632)
chr2 (242-330)||(20361979-20362067)
chr2 (242-330)||(44421445-44421533)
chr2 (221-328)||(35178816-35178923)
chr2 (242-328)||(2131753-2131839)
chr2 (242-303)||(247656-247717)
chr2 (257-330)||(14420688-14420761)
chr2 (242-303)||(27749508-27749569)
chr2 (237-330)||(41865707-41865799)
chr2 (237-329)||(21012844-21012936)
chr2 (278-330)||(38982092-38982144)
[»] chr5 (27 HSPs)
chr5 (206-326)||(34877626-34877746)
chr5 (235-330)||(25017694-25017789)
chr5 (236-330)||(10933996-10934090)
chr5 (232-330)||(27798142-27798240)
chr5 (242-330)||(27587834-27587922)
chr5 (242-330)||(43060530-43060618)
chr5 (221-327)||(9946381-9946487)
chr5 (237-330)||(10523294-10523387)
chr5 (237-330)||(27642493-27642586)
chr5 (234-330)||(3247294-3247390)
chr5 (242-330)||(35569025-35569113)
chr5 (227-330)||(5845157-5845260)
chr5 (243-330)||(15898483-15898570)
chr5 (237-330)||(21912111-21912204)
chr5 (221-330)||(36177267-36177376)
chr5 (237-330)||(39690506-39690599)
chr5 (242-330)||(3559047-3559135)
chr5 (242-330)||(38972147-38972234)
chr5 (232-303)||(4738616-4738687)
chr5 (242-330)||(12895229-12895319)
chr5 (221-327)||(21574903-21575009)
chr5 (206-314)||(15967148-15967257)
chr5 (239-303)||(16969367-16969431)
chr5 (232-330)||(20946073-20946171)
chr5 (242-303)||(7510602-7510663)
chr5 (242-330)||(29866185-29866273)
chr5 (250-330)||(43453986-43454066)
[»] chr6 (20 HSPs)
chr6 (205-330)||(34513240-34513365)
chr6 (235-330)||(9461282-9461377)
chr6 (242-328)||(16327119-16327205)
chr6 (236-330)||(11302845-11302939)
chr6 (242-328)||(16350517-16350603)
chr6 (237-330)||(1763804-1763897)
chr6 (242-330)||(22410865-22410953)
chr6 (237-330)||(19838922-19839015)
chr6 (242-330)||(12514607-12514695)
chr6 (242-330)||(15981790-15981878)
chr6 (242-330)||(30465990-30466078)
chr6 (221-303)||(5895706-5895788)
chr6 (234-296)||(27441766-27441828)
chr6 (206-303)||(4250707-4250804)
chr6 (242-330)||(31945934-31946022)
chr6 (245-330)||(197473-197558)
chr6 (235-296)||(3307965-3308026)
chr6 (220-330)||(5084559-5084673)
chr6 (242-331)||(9428163-9428252)
chr6 (241-330)||(31536007-31536096)
[»] scaffold1091 (1 HSPs)
scaffold1091 (237-330)||(1934-2027)
[»] scaffold0005 (1 HSPs)
scaffold0005 (242-330)||(214614-214702)
[»] scaffold0003 (1 HSPs)
scaffold0003 (234-296)||(45533-45595)
[»] scaffold0012 (1 HSPs)
scaffold0012 (237-330)||(99838-99931)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 37601243 - 37600910
Alignment:
Q  1 tatcacttgtttaatggatctaaagttgaatttttgcttataataataagcgaggatgtagtagannnnnnnnnnnnn------acttcgggaaaagtca 94  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||                   ||||||||||||||||    
T  37601243 tatcacttgtttaatggatctaaaattgaattttt-cttataataatgagtgaggatgtagtagattttttatttttttattttacttcgggaaaagtca 37601145  T
Q  95 ttgtatgtagttaaattactannnnnnnctaaatattgtactctatcctgc-attattataaacnnnnnnntttcatttttaatgttcattaaataatta 193  Q
    |||||||||||||||||||||       |||||||||||||||||||| || ||||||||||||       |||||||||||||||||||||||||||||    
T  37601144 ttgtatgtagttaaattactattttct-ctaaatattgtactctatccggccattattataaacaaaaat-tttcatttttaatgttcattaaataatta 37601047  T
Q  194 atgcatctagtctactccatctgtcatttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgattta 293  Q
    |||||||| ||||||||||||| ||||||||| |||||| ||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  37601046 atgcatctggtctactccatctatcatttaatgtagggacccatcacctttttcacattttttaagaaatgttgtaagtataattaatgtgtctgattta 37600947  T
Q  294 tgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||||||||||||||||||||||||||    
T  37600946 tgtgttaatactgccaaattatcttttgtttgtatgt 37600910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 220 - 330
Target Start/End: Original strand, 25198263 - 25198373
Alignment:
Q  220 tttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttt 319  Q
    |||||| |||| |||||||||||||||||||||| |||||||| ||||||||| ||| |||||||| || ||| |||||||||| | ||||||| || ||    
T  25198263 tttaatgtaggcatccattgcctttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatattaccaaattgtcctt 25198362  T
Q  320 tgtttgtatgt 330  Q
    |||||||||||    
T  25198363 tgtttgtatgt 25198373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 25185018 - 25185114
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| ||| |||||||||| | | ||||| || |||||||||||||    
T  25185018 ccattgcctttttcacatttcttaagaaaagttgtcagtgtaactaatgtgtctgttttgtgtgttaatattacgaaattgtcatttgtttgtatgt 25185114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 24512298 - 24512189
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| |||||||  ||||||||||||||||||||||  |||||||| ||| ||||||||||| ||| |||||||||| |  |||||| ||||||    
T  24512298 ttaatgtaggcatccattatctttttcacattttttaagaaaatttgtcagtgtaattaatgtgtctgttttgtgtgttaatattatcaaattgtctttt 24512199  T
Q  321 gtttgtatgt 330  Q
    ||||||||||    
T  24512198 gtttgtatgt 24512189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 41086963 - 41087058
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| ||||||| ||||||||| |||||||| ||| ||||||||||||||| |||||||||| |  |||||| || |||||||||||||    
T  41086963 ccattgcctttt-cacatttcttaagaaatattgtcagtgtaattaatgtgtctgatttgtgtgttaatattatcaaattttcctttgtttgtatgt 41087058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 37956109 - 37956206
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgta 331  Q
    |||||| ||||||||||||| |||||||| ||||||||| ||| ||||||||||| ||| |||||||||| | | || || || ||||||||||||||    
T  37956109 ccattgtctttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacgaatttgtcctttgtttgtatgta 37956206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 330
Target Start/End: Complemental strand, 39543809 - 39543682
Alignment:
Q  206 tactccatctgtcatttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatact 305  Q
    ||||||||| ||| |||||| |||| | | ||||||||||||| |||| ||||||||||||||| || ||| ||||||||||| ||| || ||||||| |    
T  39543809 tactccatccgtcctttaatgtaggcacctattgcctttttcatatttcttaagaaatgttgtccgtgtaattaatgtgtctgttttgtgcgttaatatt 39543710  T
Q  306 g---ccaaattatcttttgtttgtatgt 330  Q
        ||||||| ||||||||||||||||    
T  39543709 attaccaaattgtcttttgtttgtatgt 39543682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 14847031 - 14846943
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||||||||||| |||||| || ||| ||||||||||| ||| || ||||||| | ||| ||| ||||||||||||||||    
T  14847031 tttttcacattttttaagaaaagttgtcggtgtaattaatgtgtctgctttgtgcgttaatattaccatattgtcttttgtttgtatgt 14846943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 328
Target Start/End: Complemental strand, 16002841 - 16002747
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtat 328  Q
    ||||| ||||||||||||||||||||||| |||||| || ||| ||||||||| | ||| |||||||||| |   |||||||| |||||||||||    
T  16002841 ccatttcctttttcacattttttaagaaaagttgtctgtgtaattaatgtgtcagttttgtgtgttaatattaagaaattatcctttgtttgtat 16002747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 26878843 - 26878749
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgta 331  Q
    ||||||||||||||||| |||||||| ||||| | | ||| ||||||||||  ||| |||||||||| | ||||||| || ||||||||||||||    
T  26878843 ttgcctttttcacatttcttaagaaaagttgttaatgtaattaatgtgtctattttgtgtgttaatattaccaaattgtcctttgtttgtatgta 26878749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 330
Target Start/End: Original strand, 37141716 - 37141810
Alignment:
Q  236 attgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||| ||||||||||||||||| ||| ||||||||| ||| |||||| |||| ||| |||||||||| | | ||||| || |||||||||||||    
T  37141716 attgcatttttcacattttttaaaaaaagttgtcagtgtaattaatgtatctgttttgtgtgttaatattacgaaattgtcatttgtttgtatgt 37141810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 40337322 - 40337213
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| |||||||| ||||||||||||| ||| |||| ||| ||||||||| |||||||| || ||| | |||||||| | | ||||| || |||    
T  40337322 ttaatgtaggcatccattgtctttttcacatttcttatgaaaagttatcagtataattaatgtgtatgttttgtatgttaatattacaaaattgtccttt 40337223  T
Q  321 gtttgtatgt 330  Q
    ||||||||||    
T  40337222 gtttgtatgt 40337213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 40602156 - 40602063
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| ||||||||||||||| ||||| ||| | |||  || |||||||||| ||||||||||||||| | | |||||||| |||||||||||||    
T  40602156 ttgcttttttcacattttttcagaaaagttattagtgcaattaatgtgtcttatttatgtgttaatattactaaattatcctttgtttgtatgt 40602063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 43980693 - 43980605
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||| ||| ||  ||||||||||  |||||||||||||| | | |||||||| |||||||||||||    
T  43980693 tttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattatcatttgtttgtatgt 43980605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 40517734 - 40517824
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| ||||||||||||||||||||| ||||||||  |||   ||||||||| ||| |||||||||| | ||||||| || |||||||||||||    
T  40517734 ttgcatttttcacattttttaagaaaagttgtcagagtaa---atgtgtctgttttgtgtgttaatattaccaaattgtcctttgtttgtatgt 40517824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 330
Target Start/End: Original strand, 7772502 - 7772596
Alignment:
Q  236 attgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||| ||||||||||||||| ||||||| | ||| ||||||||||| ||| |||||||||| | | ||||| || ||| |||||||||    
T  7772502 attgtcttttttacattttttaagaaaagttgtcattgtaattaatgtgtctgttttgtgtgttaatattacgaaattgtcctttatttgtatgt 7772596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 24276670 - 24276579
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||||||| |||| ||| ||||| ||||||| ||||||||||   || |||||||||| | ||||||| || |||||||||||||    
T  24276670 ttgcctttttcacatttcttaaaaaaagttgttagtataattaatgtgtct--attgtgtgttaatattaccaaattgtcatttgtttgtatgt 24276579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 24962480 - 24962387
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||| ||| ||  ||||||||||  |||||||||||||| | | ||||| || |||||||||||||    
T  24962480 ttgcttttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgtttgtatgt 24962387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 34882666 - 34882754
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||||||||||  |||| | |  || ||||||||||  ||| |||||||||| |  |||||||||||||||||||||||    
T  34882666 tttttcacattttttaagaaaaattgttaatgcaattaatgtgtctattttgtgtgttaatattatcaaattatcttttgtttgtatgt 34882754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 4274024 - 4273957
Alignment:
Q  236 attgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    |||| ||||||||||||| ||||||||| |||| ||| ||| |||||||| || ||||||||||||||    
T  4274024 attgtctttttcacatttcttaagaaatattgttagtgtaattaatgtgtttgttttatgtgttaata 4273957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 1769578 - 1769516
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgt 283  Q
    ||||| |||| ||||||| | ||||||||||||||||||||||||| ||||| ||| ||||||    
T  1769578 ttaatgtaggcatccattacttttttcacattttttaagaaatgttatcagtgtaattaatgt 1769516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 38773480 - 38773370
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaat-gttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttt 319  Q
    ||||| |||| | |||||| ||||||||||||| |||| |||  |||||||||  || ||||||||||| ||| |||||||| | | | ||||| |||||    
T  38773480 ttaatgtaggcaaccattgtctttttcacatttcttaaaaaaaagttgtcagtgcaattaatgtgtctgttttgtgtgttaacattacgaaattgtcttt 38773381  T
Q  320 tgtttgtatgt 330  Q
    |||||||||||    
T  38773380 tgtttgtatgt 38773370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 328
Target Start/End: Original strand, 40790785 - 40790870
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtat 328  Q
    |||||||||||| |||||||| ||||||||| ||| ||||| ||||| ||| ||| |||||| | ||||||| || |||||||||||    
T  40790785 tttttcacatttcttaagaaaagttgtcagtgtaattaatgcgtctg-tttgtgtattaatattaccaaattgtcatttgtttgtat 40790870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 57298 - 57237
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    |||||||||||| |||||||| |||||| || ||| ||||||||||| ||| ||||||||||    
T  57298 tttttcacatttcttaagaaaagttgtcggtgtaattaatgtgtctgttttgtgtgttaata 57237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 885453 - 885545
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||||||| ||| || | |||||| ||| |||||||||| |  |||||| || |||||||||||||    
T  885453 ttgcttttttcacatttattaagaaaagttgtcagtgtaattattatgtctg-tttgtgtgttaatattatcaaattgtcctttgtttgtatgt 885545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 2562845 - 2562752
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| ||||||||   ||||||| ||| ||||||||||| ||| | |||||||| | | ||||| || |||||||||||||    
T  2562845 ttgcttttttcacatttcttaagaaaaactgtcagtgtaattaatgtgtctgttttgtatgttaatattacgaaattgtcctttgtttgtatgt 2562752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 38761469 - 38761380
Alignment:
Q  241 ctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||| |||| |||| ||| ||||||||| ||| ||||||||||| ||| |||||||||| |   ||||| || |||||||||||||    
T  38761469 ctttttcatatttattaaaaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattatgaaattgtcatttgtttgtatgt 38761380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 14577762 - 14577674
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||| ||| ||| ||||||||||  ||| | |||||||| | ||||||| |  |||||||||||||    
T  14577762 tttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctattttgtttgttaatattaccaaattgtactttgtttgtatgt 14577674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 14739433 - 14739509
Alignment:
Q  250 attttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgt 326  Q
    ||||||||||||| |||||| || ||| |||||||| |  ||||| |||||||| | |||||||||| |||||||||    
T  14739433 attttttaagaaaagttgtccgtgtaattaatgtgtttattttatatgttaatattaccaaattatcctttgtttgt 14739509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 31673593 - 31673680
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||||||||||| |||||  || ||| |||||||| |  ||| | |||||||| | |||||||||| |||||||||||||    
T  31673593 tttttcacattttttaagaaaagttgt-ggtgtaattaatgtgtttattttgtatgttaatattaccaaattatcctttgtttgtatgt 31673680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 45185377 - 45185289
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||||  | |||  |||||||||| ||||||| |||||| |  |||||| || |||||||||||||    
T  45185377 tttttcacatttcttaagaaaagttgtcgttgtaataaatgtgtctgttttatgtattaatattatcaaattgtcctttgtttgtatgt 45185289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 330
Target Start/End: Complemental strand, 38770304 - 38770209
Alignment:
Q  235 cattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||| |||||||| |||| |||||| | ||||||||| ||| |||||||| |  ||| |||||||||| | | ||||| || |||||||||||||    
T  38770304 cattgtctttttcatatttcttaagataagttgtcagtgtaattaatgtgtttattttgtgtgttaatattacgaaattgtcatttgtttgtatgt 38770209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 3006888 - 3006803
Alignment:
Q  245 ttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||| |||||||| ||||| ||||||| |||| |||||  |||||||||||||| | | |||||||| ||| | |||||||    
T  3006888 ttcatatttcttaagaaaagttgttagtataattaatatgtctattttatgtgttaatattactaaattatcatttatctgtatgt 3006803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 31746520 - 31746427
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| ||||||||  |||| |||  || ||||||||||  ||| |||||||||| | | ||||| || |||||||||||||    
T  31746520 ttgcttttttcacatttcttaagaaaaattgttagtgcaattaatgtgtctattttgtgtgttaatattacaaaattgtcatttgtttgtatgt 31746427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 36437492 - 36437585
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||| ||||||||||||||||   ||| |||  || ||||||||||  ||| |||||||| | | ||||||| || |||||||||||||    
T  36437492 ttgccttttccacattttttaagaaaaaatgttagtgcaattaatgtgtctattttgtgtgttaacattaccaaattgtcctttgtttgtatgt 36437585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 38203103 - 38203014
Alignment:
Q  241 ctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||| |||| ||| |||||| || ||| |||| ||| || ||| |||||||||| | | ||||| || |||||||||||||    
T  38203103 ctttttcacatttcttaataaaagttgtcggtgtaattaatatgtttgttttgtgtgttaatattacgaaattgtcatttgtttgtatgt 38203014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 1177265 - 1177178
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||||||||||| ||| | ||| ||| ||||||||||| ||| | | |||||| | | ||||| |||||| |||||||||    
T  1177265 tttttcacattttttaagaaaagttat-agtgtaattaatgtgtctgttttgtatattaatattacgaaattgtcttttatttgtatgt 1177178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 3113643 - 3113555
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||| |||  || ||||| ||| |||| |||||| ||| |||||||||| |  |||||| |||||||||| |||||    
T  3113643 tttttcacatttcttaaaaaaaattatcagtgtaattaatatgtctgttttgtgtgttaatattatcaaattgtcttttgtttatatgt 3113555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 16644153 - 16644085
Alignment:
Q  235 cattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    |||||| |||||||||||| |||||||| ||||| ||| ||| |||||||| |  ||| ||||||||||    
T  16644153 cattgcatttttcacatttcttaagaaaagttgttagtgtaattaatgtgtatattttgtgtgttaata 16644085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 40645648 - 40645757
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| |||||||||||||||||||||| ||||||||||||||| || ||| ||||||||||| ||| |||||||||| | ||||||| ||||||    
T  40645648 ttaatgtaggcatccattgcctttttcacatttcttaagaaatgttgtctgtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgtctttt 40645747  T
Q  321 gtttgtatgt 330  Q
    ||||||||||    
T  40645748 gtttgtatgt 40645757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 30476015 - 30476124
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| | ||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||| |||||||||| | | ||||| || |||    
T  30476015 ttaatgtaggcacccattgcctttttcacattttttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgtccttt 30476114  T
Q  321 gtttgtatgt 330  Q
    ||||||||||    
T  30476115 gtttgtatgt 30476124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 13084469 - 13084381
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||| |||| |||||||| ||||||||||||| ||||||||||| ||| |||||||||| | ||||||||||||||||||||||||    
T  13084469 tttttcatatttcttaagaaaagttgtcagtataattaatgtgtctgttttgtgtgttaatattaccaaattatcttttgtttgtatgt 13084381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 243 - 330
Target Start/End: Complemental strand, 41825247 - 41825160
Alignment:
Q  243 ttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||| || |||||||| ||||||||| ||| ||||||||||  |||||||||||||| | ||||||||||||||||||||||||    
T  41825247 ttttcacacttcttaagaaaagttgtcagtgtaattaatgtgtctattttatgtgttaatattaccaaattatcttttgtttgtatgt 41825160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 46435846 - 46435752
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgta 331  Q
    |||| |||||||||||| |||||||| ||||||||| ||| ||||||||||| ||| |||||||||| | ||||||| || ||||||||||||||    
T  46435846 ttgcttttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgtcctttgtttgtatgta 46435752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 31531541 - 31531447
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgta 331  Q
    |||| |||||||||||| |||||||| ||||||||| ||| ||||||||||| ||| |||||| ||| |  |||||| |||||||||||||||||    
T  31531541 ttgcttttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttgatattatcaaattgtcttttgtttgtatgta 31531447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 41727359 - 41727261
Alignment:
Q  232 atccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||||||||||| |||| ||| ||||||||| ||| ||||||||||| ||| |||||||||| | | ||||| || ||| |||||||||    
T  41727359 atccattgcctttttcacatttcttaaaaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacaaaattgtcctttatttgtatgt 41727261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 26517331 - 26517238
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||||||| ||| ||||||||||| ||| |||||||||| | ||||||| || ||| |||||||||    
T  26517331 ttgcatttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttctgtgttaatattaccaaattgtcctttatttgtatgt 26517238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 29676871 - 29676762
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| | ||||||||||||||| |||| ||||||||  |||||||| ||| ||||||||||  |||||||||||||| | | ||||| ||||||    
T  29676871 ttaatgtaggcacccattgcctttttcatatttcttaagaaaaattgtcagtgtaattaatgtgtctattttatgtgttaatattacgaaattgtctttt 29676772  T
Q  321 gtttgtatgt 330  Q
     |||||||||    
T  29676771 atttgtatgt 29676762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 20945411 - 20945323
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||| ||| ||| ||||||||||  |||||||||||||| | || ||||||| |||||||||||||    
T  20945411 tttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctattttatgtgttaatattacctaattatcctttgtttgtatgt 20945323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 29645353 - 29645441
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||||||||| ||| ||| |||||| |||| |||||||||||||| | | ||||| || |||||||||||||    
T  29645353 tttttcacatttattaagaaatgttgttagtgtaattaatgtatctgttttatgtgttaatattacgaaattgtcatttgtttgtatgt 29645441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 50363022 - 50363110
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||||||||||  |||||||| ||| |||| |||||| ||||||| |||||| | ||||||| || |||||||||||||    
T  50363022 tttttcacattttttaagaaaaattgtcagtgtaattaatatgtctgttttatgtattaatattaccaaattgtcatttgtttgtatgt 50363110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 330
Target Start/End: Complemental strand, 41308890 - 41308799
Alignment:
Q  239 gcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||||| |||| ||||||||||||| ||| ||||||||||| ||| |||||||||| | |||| ||||  ||||||| |||||    
T  41308890 gcctttttcacatttcttaaaaaatgttgtcagtgtaattaatgtgtctgttttgtgtgttaatattaccaatttattctttgtttatatgt 41308799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 12077875 - 12077766
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| | ||||||| ||||||| |||| |||||||| ||||||||| ||| ||||||||||  ||| |||||||||| | | ||||| || |||    
T  12077875 ttaatgtaggcacccattgcatttttcaaatttcttaagaaaagttgtcagtgtaattaatgtgtctcttttgtgtgttaatattacaaaattgtcattt 12077776  T
Q  321 gtttgtatgt 330  Q
    ||||||||||    
T  12077775 gtttgtatgt 12077766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 14646005 - 14645912
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| ||||||||||||||||||||| ||||| ||| ||| ||||||||||  ||| |||||||||| | ||||||| |  |||||||||||||    
T  14646005 ttgcttttttcacattttttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaattgttatttgtttgtatgt 14645912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 42891414 - 42891503
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgta 331  Q
    |||||||||||| |||||||| ||||| ||||||| |||| |||||| ||| |||||||||| | ||||| | || ||||||||||||||    
T  42891414 tttttcacatttcttaagaaaagttgttagtataattaatttgtctgttttgtgtgttaatattaccaaactgtcctttgtttgtatgta 42891503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 11140700 - 11140788
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||| ||||||||| ||| ||||| ||| |||||||| || ||| ||||||| || | |||||||||| |||||||||||||    
T  11140700 tttttcacattgtttaagaaaagttatcagtgtaaataatgtgtatgttttgtgtgttagtattaccaaattatcctttgtttgtatgt 11140788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 22659575 - 22659663
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||| |||||| |||||||| ||||| ||||||| |||||| | |  ||| |||||||||| | ||||||||||||||||||||||||    
T  22659575 ttttttacatttcttaagaaaagttgttagtataattaatgtatttattttgtgtgttaatattaccaaattatcttttgtttgtatgt 22659663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 31819401 - 31819489
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||| || || ||| ||||||||||| |||||||||||||| | | ||||| || |||||||||||||    
T  31819401 tttttcacatttcttaagaaaagttatcggtgtaattaatgtgtctgttttatgtgttaatattacgaaattgtcctttgtttgtatgt 31819489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 46048517 - 46048605
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||||||| ||| ||||||||||| ||| ||| |||||| | | ||||| || |||||||||||||    
T  46048517 tttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtattaatattacgaaattgtcctttgtttgtatgt 46048605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 327
Target Start/End: Original strand, 26998868 - 26998975
Alignment:
Q  220 tttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttt 319  Q
    |||||| |||| |||||||  ||||||||||||| |||||||| ||||||| ||||| |||||| |||  ||| | |||||||| | | ||||| |||||    
T  26998868 tttaatgtaggtatccattatctttttcacatttcttaagaaaagttgtcattataattaatgtatctattttgtttgttaatattacgaaattgtcttt 26998967  T
Q  320 tgtttgta 327  Q
    ||||||||    
T  26998968 tgtttgta 26998975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 330
Target Start/End: Complemental strand, 27638210 - 27638100
Alignment:
Q  220 tttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttt 319  Q
    ||||||||||| ||||||| |||||||||||||| |||||||| ||| | ||| ||| |||||| |||  ||| |||||||||| |   ||||| || ||    
T  27638210 tttaatataggcatccattacctttttcacatttcttaagaaaagttattagtgtaattaatgtctctattttgtgtgttaatattataaaattgtcctt 27638111  T
Q  320 tgtttgtatgt 330  Q
    |||||||||||    
T  27638110 tgtttgtatgt 27638100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 26121322 - 26121415
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| ||||| |||||| |||||||| ||||||||| ||| |||||||| || ||| |||||||||| |  |||||| || |||||||||||||    
T  26121322 ttgcattttttacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatattatcaaattgtcctttgtttgtatgt 26121415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 330
Target Start/End: Original strand, 29611845 - 29611917
Alignment:
Q  258 agaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||| ||| ||| ||||||||||  ||| |||||||||| |  |||||||||||||||||||||||    
T  29611845 agaaatgttgttagtgtaattaatgtgtctattttgtgtgttaatattatcaaattatcttttgtttgtatgt 29611917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 37729140 - 37729052
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| ||||||||  |||| | ||||| ||||||||||  ||| |||||||||| |  || ||||||||||||||||||||    
T  37729140 tttttcacatttcttaagaaaaattgttaatataattaatgtgtctattttgtgtgttaatattatcatattatcttttgtttgtatgt 37729052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 41740084 - 41739996
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||||||||||  || | | || || ||||||||||  ||| |||||||||| | |||||||||| |||||||||||||    
T  41740084 tttttcacattttttaagaaaaattattaatacaattaatgtgtctattttgtgtgttaatattaccaaattatcctttgtttgtatgt 41739996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 330
Target Start/End: Complemental strand, 43187211 - 43187116
Alignment:
Q  235 cattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||| |||| |||| ||| ||||||| | ||| ||||||||||| ||| ||| |||||| | | ||||| || |||||||||||||    
T  43187211 cattgcctttttcatatttcttaaaaaaagttgtcaatgtaattaatgtgtctgttttgtgtattaatattacgaaattgtcctttgtttgtatgt 43187116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 11388111 - 11388204
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| ||||||||  |||| ||| ||| ||||||||||  |||  ||||||||| | ||||||| | ||||||||||||||    
T  11388111 ttgcttttttcacatttcttaagaaaaattgttagtgtaattaatgtgtctattttgcgtgttaatattaccaaattgtattttgtttgtatgt 11388204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 11393917 - 11394006
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgta 331  Q
    ||||||||||||||||| ||| ||||| ||| ||| ||||||||||  ||| ||||||||||||  |||||| || ||| ||| ||||||    
T  11393917 tttttcacattttttaaaaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatactatcaaattgtcatttatttatatgta 11394006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 28477395 - 28477468
Alignment:
Q  257 aagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||| |||||| ||  || ||||||||||| ||| |||||||||| | ||||||| ||||||||||||||||    
T  28477395 aagaaaagttgtcggtgcaattaatgtgtctgttttgtgtgttaatattaccaaattgtcttttgtttgtatgt 28477468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 31474418 - 31474507
Alignment:
Q  241 ctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||| |||||||||||||||  || |  |||||||||||||||||| ||| || ||||||| |   |||||||| |||||||||||||    
T  31474418 cttttttacattttttaagaaaattttttggtataactaatgtgtctgttttgtgcgttaatattattaaattatcatttgtttgtatgt 31474507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 26043014 - 26043102
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||| |||||| ||||||||  |||||||| ||| |||| |||||| ||| |||||||||  | ||||||| || |||||||||||||    
T  26043014 ttttttacatttcttaagaaaaattgtcagtgtaattaatatgtctgttttgtgtgttaatgttaccaaattgtcctttgtttgtatgt 26043102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 51263077 - 51263165
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||| |||  |||| ||| ||| ||||||||||| ||||||||||| || | | ||||| || |||||||||||||    
T  51263077 tttttcacatttcttaaaaaaaattgttagtgtaattaatgtgtctgttttatgtgttagtattactaaattgtcctttgtttgtatgt 51263165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 330
Target Start/End: Complemental strand, 27047288 - 27047201
Alignment:
Q  243 ttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||  |||||||| | ||| |||  || ||||||||||  ||| |||||||||| | ||||||| ||||||||||||||||    
T  27047288 ttttcacattccttaagaaaagctgttagtgcaattaatgtgtctattttgtgtgttaatattaccaaattgtcttttgtttgtatgt 27047201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 330
Target Start/End: Original strand, 44338078 - 44338164
Alignment:
Q  243 ttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||||||||| ||||| ||| ||  |||| ||||| |||| |||||||||| | ||||||| || ||||||| |||||    
T  44338078 ttttcacattttttaagaaaagttgttagtgtagttaat-tgtctaatttttgtgttaatattaccaaattgtcctttgtttctatgt 44338164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 53717652 - 53717578
Alignment:
Q  227 tagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaa 301  Q
    |||| |||||||  |||||| |||||| ||||||||| |||||| | ||| ||||||||||| ||| ||||||||    
T  53717652 taggcatccattatcttttttacatttcttaagaaatattgtcaatgtaattaatgtgtctgttttgtgtgttaa 53717578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 5504652 - 5504607
Alignment:
Q  243 ttttcacattttttaagaaatgttgtcagtataactaatgtgtctg 288  Q
    ||||||||||| |||||||||||||||||| ||| |||||| ||||    
T  5504652 ttttcacatttcttaagaaatgttgtcagtgtaattaatgtatctg 5504607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 42010863 - 42010952
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgta 331  Q
    |||||||||||| ||||||||  |||| | | ||| ||||||||||  ||| |||||||||| |  ||||||||  ||||||||||||||    
T  42010863 tttttcacatttcttaagaaaatttgttaatgtaattaatgtgtctattttgtgtgttaatattatcaaattattctttgtttgtatgta 42010952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 44083621 - 44083710
Alignment:
Q  242 tttttcacatttt-ttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||| ||||||||  |||| | | ||| |||||| |||  ||| |||||||||| | |||||||||| |||||||||||||    
T  44083621 tttttcacatttttttaagaaaaattgttattgtaattaatgtatctattttgtgtgttaatattaccaaattatcatttgtttgtatgt 44083710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 52325619 - 52325526
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| ||||||||   ||| ||| ||| ||||||||||  |||||||||||||| |  |||||| || ||||||| |||||    
T  52325619 ttgcatttttcacatttcttaagaaaaaatgttagtgtaattaatgtgtctattttatgtgttaatattatcaaattgtcctttgtttatatgt 52325526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 21932957 - 21933009
Alignment:
Q  278 taatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||  ||| |||||||||| | |||||||||| |||||||||||||    
T  21932957 taatgtgtctattttgtgtgttaatattaccaaattatcctttgtttgtatgt 21933009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 39617345 - 39617273
Alignment:
Q  258 agaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||| ||||||||| ||| ||||||||||| ||| | |||||||| | | ||||| || |||||||||||||    
T  39617345 agaaaagttgtcagtgtaattaatgtgtctgttttgtatgttaatattacgaaattgtcctttgtttgtatgt 39617273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 5448637 - 5448746
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| |||||||||||||||||||||| |||||||||||| ||| ||||| ||||||||||| ||| |||||||||| | | |||||||| |||    
T  5448637 ttaatgtaggcatccattgcctttttcacatttcttaagaaatgttatcaatataattaatgtgtctgttttgtgtgttaatattacgaaattatccttt 5448736  T
Q  321 gtttgtatgt 330  Q
    ||||||||||    
T  5448737 gtttgtatgt 5448746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 25477200 - 25477309
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| ||||||||| |||||||||||| |||||||| ||||||||| ||| ||||||||||| |||||||||||||| | | ||||| || |||    
T  25477200 ttaatgtaggcatccattgcttttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttatgtgttaatattacaaaattgtcattt 25477299  T
Q  321 gtttgtatgt 330  Q
    ||||||||||    
T  25477300 gtttgtatgt 25477309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 206 - 330
Target Start/End: Original strand, 52225979 - 52226103
Alignment:
Q  206 tactccatctgtcatttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatact 305  Q
    |||||| || ||| |||||| |||| | | |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |    
T  52225979 tactccctccgtcctttaatgtaggtacctattgtctttttcacattttttaagaaatgttgtcagtataattaatgtgtctgttttatatgttaatatt 52226078  T
Q  306 gccaaattatcttttgtttgtatgt 330  Q
      |||||| || ||||||| |||||    
T  52226079 atcaaattgtcctttgtttatatgt 52226103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 236 - 324
Target Start/End: Original strand, 16070421 - 16070509
Alignment:
Q  236 attgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgttt 324  Q
    |||| ||||||||||||| |||||||||| ||||||| ||| ||||||||||| ||| |||||||||| | ||||||||||||||||||    
T  16070421 attgtctttttcacatttcttaagaaatgctgtcagtgtaattaatgtgtctgttttgtgtgttaatattaccaaattatcttttgttt 16070509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 39237708 - 39237610
Alignment:
Q  232 atccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||| |||||||||||||||||||||| ||||||||| ||| |||||| |||| ||| |||||||||| | | ||||| || |||||||||||||    
T  39237708 atccattgtctttttcacattttttaagaaaagttgtcagtgtaattaatgtatctgttttgtgtgttaatattacgaaattgtcctttgtttgtatgt 39237610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 28116619 - 28116526
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| ||||||||||||||||||||| ||||| ||| ||| |||| |||||  ||| |||||||||| |||||||||||| |||||||||||||    
T  28116619 ttgcttttttcacattttttaagaaaagttgttagtgtaattaatatgtctattttgtgtgttaatattgccaaattatcatttgtttgtatgt 28116526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 330
Target Start/End: Complemental strand, 48472641 - 48472516
Alignment:
Q  206 tactccatctgtcatttaatatagggatccattgcctttttcacatttttt-aagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatac 304  Q
    |||| ||||||||  ||||| |||| |||||||| |||||||||||||||| |||||| ||||||||| ||| ||||||||||  ||| ||||||||||     
T  48472641 tacttcatctgtcccttaatgtaggcatccattgtctttttcacatttttttaagaaaagttgtcagtgtaattaatgtgtctattttgtgtgttaatat 48472542  T
Q  305 tgccaaattatcttttgtttgtatgt 330  Q
    | | |||||||| ||| |||||||||    
T  48472541 tacgaaattatcctttctttgtatgt 48472516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 327
Target Start/End: Complemental strand, 52552656 - 52552535
Alignment:
Q  206 tactccatctgtcatttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatact 305  Q
    ||||||||| |||  ||||| |||| | ||| |||| ||||||| |||||||||||| ||||||||| |||  ||| |||||| |||||||||||||| |    
T  52552656 tactccatccgtcccttaatgtaggcacccaatgcccttttcacgttttttaagaaaagttgtcagtgtaataaatttgtctgctttatgtgttaatatt 52552557  T
Q  306 gccaaattatcttttgtttgta 327  Q
     |||||||||| ||||||||||    
T  52552556 accaaattatcctttgtttgta 52552535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 206 - 330
Target Start/End: Complemental strand, 20262539 - 20262415
Alignment:
Q  206 tactccatctgtcatttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatact 305  Q
    |||||| ||||||  |||||||||  |  ||||||||||||||||||| |||||||| ||||||||| ||| ||||||||||| ||| |||||||||| |    
T  20262539 tactccctctgtcccttaatatagacactcattgcctttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatatt 20262440  T
Q  306 gccaaattatcttttgtttgtatgt 330  Q
     | ||||| |  |||||||||||||    
T  20262439 acgaaattgttatttgtttgtatgt 20262415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 30153336 - 30153243
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||||||| ||| ||||||||||| ||| |||| ||||| | |||||||||| ||| |||||||||    
T  30153336 ttgcgtttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgataatattaccaaattatcctttatttgtatgt 30153243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 54438485 - 54438594
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| |||||||| ||||||||||||| ||||||||  ||||| |||||| ||| ||||||| ||| |||||||||| | | |||||||| |||    
T  54438485 ttaatgtaggtatccattgtctttttcacatttcttaagaaaaattgtccgtataattaaagtgtctgttttgtgtgttaatattacgaaattatccttt 54438584  T
Q  321 gtttgtatgt 330  Q
     |||||||||    
T  54438585 atttgtatgt 54438594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 5536485 - 5536581
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| ||||||||||||||| ||||||||  |||||||| ||| ||||||||||| |||  ||||||||||| | ||||| || |||||||||||||    
T  5536485 ccatagcctttttcacatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttgcgtgttaatactacgaaattttcatttgtttgtatgt 5536581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 50782773 - 50782862
Alignment:
Q  241 ctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||| |||||||| ||||||||| ||| ||||||||||| ||| ||| |||||| | | ||||| || |||||||||||||    
T  50782773 ctttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtcttaatattacgaaattgtcctttgtttgtatgt 50782862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 52198842 - 52198749
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||||||| ||| |||| |||||| | | ||| |||||| | |||||||||||||| |||||||||    
T  52198842 ttgcttttttcacatttcttaagaaaagttgtcagtgtaattaatatgtctgttctgtgtattaatattaccaaattatcttttatttgtatgt 52198749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 14602764 - 14602676
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||| ||| ||| ||||||||||  ||| |||||||||| | ||||||| || |||||||||||||    
T  14602764 tttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctagtttttgtgttaatattaccaaattgtcatttgtttgtatgt 14602676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 37625234 - 37625146
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||||||||||| |||||||| |  ||| |||||||||| | | |||||||| ||||||| |||||    
T  37625234 tttttcacatttcttaagaaaagttgtcagtataattaatgtgtttattttgtgtgttaatattactaaattatcatttgtttatatgt 37625146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 330
Target Start/End: Original strand, 46729295 - 46729389
Alignment:
Q  235 cattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||| |||||||||||||| ||||||| ||||||||| ||| ||||||||||| ||| |||||||||| | | ||||| || | |||||||||||    
T  46729295 cattgtctttttcacatttt-taagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgtcctatgtttgtatgt 46729389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 330
Target Start/End: Complemental strand, 33246608 - 33246518
Alignment:
Q  240 cctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||| |||||||||||||||| ||||| ||| ||| |||  |||||  ||| |||||||||| | |||||||||| |||||||||||||    
T  33246608 ccttttccacattttttaagaaaagttgttagtgtaattaaaatgtctattttgtgtgttaatattaccaaattatcctttgtttgtatgt 33246518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 12624687 - 12624780
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||| ||| ||| ||||||| ||  |||||||||||||| | | ||||| || |||||||||||||    
T  12624687 ttgcttttttcacatttcttaagaaaagttgttagtgtaattaatgtgactattttatgtgttaatattactaaattgtcctttgtttgtatgt 12624780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 22750956 - 22750863
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| |||||| || ||| |||||| |||| ||| ||| |||||| | ||||||| || |||||||||||||    
T  22750956 ttgcatttttcacatttcttaagaaaagttgtctgtgtaattaatgtatctgttttgtgtattaatattaccaaattgtcatttgtttgtatgt 22750863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 32236806 - 32236915
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    |||||||||  | ||||||| || |||| ||||||| ||||||||||||||| ||| |||| |||||| ||| |||||||||| |  ||||||||  |||    
T  32236806 ttaatatagccacccattgctttattcatatttttttagaaatgttgtcagtgtaattaatatgtctgttttgtgtgttaatattatcaaattattcttt 32236905  T
Q  321 gtttgtatgt 330  Q
    |||| |||||    
T  32236906 gtttatatgt 32236915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 34543701 - 34543786
Alignment:
Q  245 ttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||| |||||||| |||||| || ||| ||||||||||  ||| |||||||||| | |||||| ||| |||||||||||||    
T  34543701 ttcacatttcttaagaaaagttgtccgtgtaattaatgtgtctattttgtgtgttaatattaccaaataatcctttgtttgtatgt 34543786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 37175135 - 37175043
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| |||||  || ||| ||||||||||  ||| |||||||||| | ||||||| ||||||||||||||||    
T  37175135 ttgcttttttcacatttcttaagaaaagttgtt-gtgtaattaatgtgtctattttgtgtgttaatattaccaaattgtcttttgtttgtatgt 37175043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 54359693 - 54359741
Alignment:
Q  255 ttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    |||||||| ||||||||||||| ||||||||||| ||||||||||||||    
T  54359693 ttaagaaaagttgtcagtataattaatgtgtctgttttatgtgttaata 54359741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 328
Target Start/End: Complemental strand, 41945881 - 41945796
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtat 328  Q
    |||||||||||||||||||||  |||||||| ||| |||||||| || |||||||| ||||| | | ||||| || |||||||||||    
T  41945881 tttttcacattttttaagaaaaattgtcagtgtaattaatgtgt-tgttttatgtgataatattacgaaattgtcctttgtttgtat 41945796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 24072755 - 24072824
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    |||||| |||||| |||||| |||||||| ||||||| | ||| ||||||||||| ||| ||||||||||    
T  24072755 ccattgtcttttttacatttcttaagaaaagttgtcaatgtaattaatgtgtctgttttttgtgttaata 24072824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 29584885 - 29584978
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| ||||||||  |||| ||| ||| ||||||||||  | | |||||||||| | ||||||| || |||||||||||||    
T  29584885 ttgcatttttcacatttcttaagaaaaattgttagtgtaattaatgtgtctattctgtgtgttaatattaccaaattgtcatttgtttgtatgt 29584978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 51787767 - 51787828
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    |||||||||||| |||||||| |||||| || ||| ||||||||||| ||| ||||||||||    
T  51787767 tttttcacatttcttaagaaaagttgtcggtgtaattaatgtgtctgttttgtgtgttaata 51787828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 5932883 - 5932970
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||| ||||||| ||||||||| ||| |||||||| || ||| |||||||||| |  |||||| || ||||||| |||||    
T  5932883 tttttcacatttt-taagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatattatcaaattgtcatttgtttttatgt 5932970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 13096650 - 13096563
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||| |||||| ||||| ||| ||| |||||||||||  || |||||||||| | ||||||| || ||||||| |||||    
T  13096650 tttttcacattttt-aagaaaagttgttagtgtaattaatgtgtctgtgttgtgtgttaatattaccaaattgtcatttgtttctatgt 13096563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 19654424 - 19654512
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| ||||||||   ||| ||| ||| ||||||||||  |||||||||| ||| | |||||||||| ||| |||||||||    
T  19654424 tttttcacatttcttaagaaaaactgttagtgtaattaatgtgtctattttatgtgttgatattaccaaattatcatttatttgtatgt 19654512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 38136351 - 38136439
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| ||||||||  |||| ||| ||| ||||||||||  ||| |||||||||| |  |||||| || |||||||||||||    
T  38136351 tttttcacatttcttaagaaaatttgttagtgtaattaatgtgtctattttgtgtgttaatattatcaaattgtcatttgtttgtatgt 38136439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 41920147 - 41920059
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||| |||  || |||| | |||  ||| |||||||||| | ||||||| ||||||||||||||||    
T  41920147 tttttcacatttcttaagaaaagttgttagtgcaattaatatttctattttgtgtgttaatattaccaaattgtcttttgtttgtatgt 41920059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 43509079 - 43509165
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| |||||| || ||| |||||||| || ||| |||||||||| |  |||||| ||||||||||||||||    
T  43509079 tttttcacatttcttaagaaacgttgtc-gtgtaattaatgtgt-tgttttgtgtgttaatattatcaaattgtcttttgtttgtatgt 43509165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 329
Target Start/End: Original strand, 31486484 - 31486571
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatg 329  Q
    |||||||||||| |||||||| ||||| |||  || ||||||||||  ||| |||||||||| | | |||||||| ||||||| ||||    
T  31486484 tttttcacatttcttaagaaaagttgttagtgcaattaatgtgtctattttgtgtgttaatattactaaattatcctttgtttatatg 31486571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 43800786 - 43800824
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagt 272  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  43800786 ccattgcctttttcacatttgttaagaaatgttctcagt 43800824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 50438946 - 50438892
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgt 296  Q
    |||||||||||| ||||||||||||||| ||  |  |||||||||||||||||||    
T  50438946 tttttcacatttcttaagaaatgttgtctgtgcagttaatgtgtctgatttatgt 50438892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 20291331 - 20291424
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||  | | ||| ||||||||||  ||| || ||||||| | | |||||||| |||||||||||||    
T  20291331 ttgcttttttcacatttcttaagaaaagttggtaatgtaattaatgtgtctattttgtgggttaatattactaaattatcatttgtttgtatgt 20291424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 7002227 - 7002267
Alignment:
Q  290 tttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||| | |||||||||| |||||||||||||    
T  7002227 tttatgtgttaatattaccaaattatcctttgtttgtatgt 7002267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 330
Target Start/End: Complemental strand, 39197143 - 39197055
Alignment:
Q  243 ttttcacattttttaagaaatgttgtcagtataactaatgtgtct-gatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||| ||||||||  |||||| ||| | |||||||||| | ||| |||||||||| |  |||||| ||||||||||||||||    
T  39197143 tttttacatttcttaagaaaaattgtcactatgattaatgtgtcttgttttgtgtgttaatattatcaaattgtcttttgtttgtatgt 39197055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 56217140 - 56217100
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtat 274  Q
    ||||||| ||||||||||||||||||||| ||||| |||||    
T  56217140 ccattgcttttttcacattttttaagaaaagttgttagtat 56217100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 51)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 5085218 - 5085109
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| | ||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||| |||||||||| | | ||||| ||||||    
T  5085218 ttaatgtaggcacccattgcctttttcacattttttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgtctttt 5085119  T
Q  321 gtttgtatgt 330  Q
    ||||||||||    
T  5085118 gtttgtatgt 5085109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 25269362 - 25269460
Alignment:
Q  232 atccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||| |||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||| | | ||||| || |||||||||||||    
T  25269362 atccattgtctttttcacattttttaagaaaagttgtcagtgtaaataatgtgtctgttttatgtgttaatattacgaaattttcctttgtttgtatgt 25269460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 30898676 - 30898583
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| ||||||||  |||||||| ||| ||||||||||| |||||||||||||| | |||||||||| |||||||||||||    
T  30898676 ttgcttttttcacatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttatgtgttaatattaccaaattatcctttgtttgtatgt 30898583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 34697012 - 34696903
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||||||||| || |||||||||||||||||||||| ||||||||| ||| |||| |||||| ||| |||||||||| | | ||||| || |||    
T  34697012 ttaatgtagggatccactgtctttttcacattttttaagaaaagttgtcagtgtaattaatatgtctgttttgtgtgttaatattacgaaattgtcattt 34696913  T
Q  321 gtttgtatgt 330  Q
    ||||||||||    
T  34696912 gtttgtatgt 34696903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 16582518 - 16582616
Alignment:
Q  232 atccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||| ||||||||||||| |||||||| ||||||||| ||| ||||||||||| ||| |||||||||| | | ||||| |||||| |||||||||    
T  16582518 atccattgtctttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgtcttttatttgtatgt 16582616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 33231825 - 33231923
Alignment:
Q  232 atccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||||||||||| |||| ||| ||||||||| ||| ||||||||||| ||| |||||||||| | | ||||| || |||||||||||||    
T  33231825 atccattgcctttttcacatttcttaaaaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgtcctttgtttgtatgt 33231923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 206 - 330
Target Start/End: Original strand, 3143362 - 3143486
Alignment:
Q  206 tactccatctgtcatttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatact 305  Q
    |||||| ||||||  ||||| |||| | ||||||| |||||||||||| |||||||| ||||||| | ||| ||||||||||| ||| |||||||||| |    
T  3143362 tactccctctgtcccttaatgtaggcacccattgcttttttcacatttcttaagaaaagttgtcattgtaattaatgtgtctgctttgtgtgttaatatt 3143461  T
Q  306 gccaaattatcttttgtttgtatgt 330  Q
     | ||||| |||||||||| |||||    
T  3143462 acaaaattgtcttttgtttttatgt 3143486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 330
Target Start/End: Original strand, 8877760 - 8877855
Alignment:
Q  235 cattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||| |||||||||||||  |||||||||||| |||||||| || ||| |||||||||| | | ||||| || |||||||||||||    
T  8877760 cattgcctttttcatattttttaagaaaaattgtcagtataattaatgtgtttgttttgtgtgttaatattacgaaattgtcatttgtttgtatgt 8877855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 28723756 - 28723673
Alignment:
Q  247 cacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||||| ||||| ||| ||| ||||||||||  ||| |||||||||| | ||||||||||||||||||||||||    
T  28723756 cacattttttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaattatcttttgtttgtatgt 28723673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 32047416 - 32047525
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| | ||||||| |||||||||||| |||||||| ||||||||| ||| |||||||| || ||| |||||||||| | | ||||| || |||    
T  32047416 ttaatgtaggcacccattgcttttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatattacgaaattgtcattt 32047515  T
Q  321 gtttgtatgt 330  Q
    ||||||||||    
T  32047516 gtttgtatgt 32047525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 44395522 - 44395619
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgta 331  Q
    |||||| | ||||||||||| |||||||||||||||||| ||| |||| ||| |  |||||||||||||| | | |||||||| ||||||||||||||    
T  44395522 ccattgtccttttcacatttcttaagaaatgttgtcagtgtaattaatatgtttattttatgtgttaatattacaaaattatcctttgtttgtatgta 44395619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 48721998 - 48721888
Alignment:
Q  221 ttaatatagggatccattgccttttt-cacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttt 319  Q
    ||||| |||| | ||||||||||||| ||||||| |||||||| | ||||||| ||| ||||||||||| ||| |||||||||| | | ||||| || ||    
T  48721998 ttaatgtaggcacccattgccttttttcacatttcttaagaaaagctgtcagtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgtcctt 48721899  T
Q  320 tgtttgtatgt 330  Q
    |||||||||||    
T  48721898 tgtttgtatgt 48721888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 20564765 - 20564858
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||  ||| ||||||||||||||  |||||||||||||| | | ||||| ||||||||||| ||||    
T  20564765 ttgcatttttcacatttgttaagaaaagttgatagtgtaactaatgtgtctactttatgtgttaatattacaaaattgtcttttgtttgaatgt 20564858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 327
Target Start/End: Original strand, 44335284 - 44335369
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgta 327  Q
    |||||||||||| |||| ||| ||||||||| ||| ||||||||||| ||| |||||||||| | ||||||| || ||||||||||    
T  44335284 tttttcacatttcttaataaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgtcctttgtttgta 44335369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 16395648 - 16395568
Alignment:
Q  250 attttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||||||| || || ||| ||||||||||  ||| | |||||||| | ||||||||||||||||||||||||    
T  16395648 attttttaagaaatgttatcggtgtaattaatgtgtctattttgtatgttaatattaccaaattatcttttgtttgtatgt 16395568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 330
Target Start/End: Complemental strand, 29140798 - 29140674
Alignment:
Q  206 tactccatctgtcatttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatact 305  Q
    |||||| || ||| |||||| |||  ||| |||||||||||||||||| |||||||| |||| | || ||| ||||||||||| ||| ||| |||||| |    
T  29140798 tactccctccgtcctttaatgtagtcatctattgcctttttcacatttcttaagaaaagttgccggtgtaattaatgtgtctgttttgtgtattaatatt 29140699  T
Q  306 gccaaattatcttttgtttgtatgt 330  Q
     | ||||| || |||||||||||||    
T  29140698 acaaaattgtcctttgtttgtatgt 29140674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 10160693 - 10160760
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctg 288  Q
    |||||||||| |||| ||||||||||||||||| |||||||| ||| ||||| ||| |||||||||||    
T  10160693 ttaatataggcatccgttgcctttttcacatttcttaagaaaagttatcagtgtaattaatgtgtctg 10160760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 27531089 - 27531155
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    |||| |||||||||||| |||||||| ||||||||||||| |||||||| || ||| ||||||||||    
T  27531089 ttgcatttttcacatttcttaagaaaagttgtcagtataattaatgtgtttgttttgtgtgttaata 27531155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 28334331 - 28334265
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgtta 300  Q
    |||||| ||||||||||||| |||||||| ||||||||| ||| ||||||||||| ||| |||||||    
T  28334331 ccattgtctttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgtta 28334265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 329
Target Start/End: Original strand, 30336047 - 30336141
Alignment:
Q  235 cattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatg 329  Q
    |||||| |||||||||||| |||||||| |||||| || ||| ||||||||||  ||| |||||||||| | ||||||| || ||||||| ||||    
T  30336047 cattgcttttttcacatttcttaagaaaagttgtcggtgtaattaatgtgtctattttgtgtgttaatattaccaaattgtcctttgtttctatg 30336141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 326
Target Start/End: Original strand, 2342894 - 2342983
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgt 326  Q
    |||| |||||||||||||||||||||  |||| ||| ||  ||||||||||  ||| |||||||||| | ||||||| ||||||||||||    
T  2342894 ttgcttttttcacattttttaagaaaaattgttagtttacttaatgtgtctattttgtgtgttaatattaccaaattgtcttttgtttgt 2342983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 8984774 - 8984681
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||||||||| ||  |||| ||| ||| ||||||||||| ||| |||||||||| | | ||||| || |||||||||||||    
T  8984774 ttgcatttttcacattttttaaggaaaattgttagtgtaattaatgtgtctgttttgtgtgttaatattactaaattgtcatttgtttgtatgt 8984681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 13723591 - 13723498
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||| |||  || ||||||||||  ||| ||| |||||| | |||||||||| |||||||||||||    
T  13723591 ttgcatttttcacatttcttaagaaaagttgttagtgcaattaatgtgtctattttgtgtattaatattaccaaattatcctttgtttgtatgt 13723498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 15512894 - 15512801
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||| ||| ||  ||||||||||  |||||||||||||| | | ||||| || |||||||||||||    
T  15512894 ttgcttttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgtttgtatgt 15512801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 24414990 - 24415083
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||| |||||| ||||| ||| ||||| || ||| |||||| |||  ||| |||||||||| | |||||||||| |||||||||||||    
T  24414990 ttgccttttttacatttattaagtaatattgtcggtgtaattaatgtatctcttttgtgtgttaatattaccaaattatcatttgtttgtatgt 24415083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 28949077 - 28948984
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||| ||| ||  ||||||||||  |||||||||||||| | | ||||| || |||||||||||||    
T  28949077 ttgcttttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgtttgtatgt 28948984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 38680470 - 38680558
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||| ||| ||| ||||||||||  ||| |||||||||| |  |||||| || |||||||||||||    
T  38680470 tttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattatcaaattgtcatttgtttgtatgt 38680558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 328
Target Start/End: Complemental strand, 5322152 - 5322045
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| ||| ||||||||||||| ||||||||||||| ||| ||| | ||| ||||||||||| ||| |||||| ||| | | ||||| |  |||    
T  5322152 ttaatgtaggcatctattgcctttttcatattttttaagaaaagttatcaatgtaattaatgtgtctgttttgtgtgtttatattacgaaattgttattt 5322053  T
Q  321 gtttgtat 328  Q
    ||||||||    
T  5322052 gtttgtat 5322045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 328
Target Start/End: Complemental strand, 23982705 - 23982614
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtat 328  Q
    |||| |||||||||||| |||||||| ||||||| | ||| ||||||||||| ||| |||||||||| |  ||||||  | |||||||||||    
T  23982705 ttgcatttttcacatttcttaagaaaagttgtcaatgtaattaatgtgtctgttttgtgtgttaatattatcaaattgacatttgtttgtat 23982614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 330
Target Start/End: Complemental strand, 31808079 - 31807992
Alignment:
Q  243 ttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||| || || ||||| ||||| ||| ||| ||||||||||  ||| |||||||||| | ||||||||||||||||||| ||||    
T  31808079 ttttcacacttcttgagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaattatcttttgtttgcatgt 31807992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 330
Target Start/End: Original strand, 36084958 - 36085053
Alignment:
Q  235 cattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||| ||||||||||||||||||||||  || ||||| ||| |||||| |||| ||| |||||||||| |   |||||||| ||| |||||||||    
T  36084958 cattgtctttttcacattttttaagaaaaattatcagtgtaattaatgtatctgttttgtgtgttaatattaagaaattatcctttatttgtatgt 36085053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 331
Target Start/End: Original strand, 13352832 - 13352918
Alignment:
Q  245 ttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgta 331  Q
    ||||||||| ||||||||||| || |||  || ||||||||||| |||||||||||||| |  |||||| || ||| ||||||||||    
T  13352832 ttcacatttcttaagaaatgtagttagttcaattaatgtgtctgttttatgtgttaatattagcaaattgtcatttatttgtatgta 13352918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 4813575 - 4813482
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||| | |  || ||||||||||  ||| |||||||||| | |||||||||  |||||||||||||    
T  4813575 ttgcttttttcacatttcttaagaaaagttgttaatgcaattaatgtgtctattttgtgtgttaatattaccaaattattctttgtttgtatgt 4813482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 15179400 - 15179493
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| ||||||||  |||||||| ||| ||||||||||  |||||| || |||| | | ||||| || |||||||||||||    
T  15179400 ttgcttttttcacatttcttaagaaaaattgtcagtgtaattaatgtgtctattttatgcgtaaatattacaaaattgtcctttgtttgtatgt 15179493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 46495304 - 46495393
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgta 331  Q
    |||||||||||||| || |||  |||||||| ||| ||||||||||| ||| |||||||||| |  |||||| || ||| ||||||||||    
T  46495304 tttttcacatttttaaaaaaaaattgtcagtgtaattaatgtgtctgttttgtgtgttaatattatcaaattgtcctttatttgtatgta 46495393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 50692399 - 50692492
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||| ||||||||||| |||||||| ||||||| |  || ||||||||||  ||| ||||||| || | ||||||| || |||||||||||||    
T  50692399 ttgcccttttcacatttcttaagaaaagttgtcaatgcaattaatgtgtctattttgtgtgttagtattaccaaattgtcctttgtttgtatgt 50692492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 25258325 - 25258413
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||| ||||||||||||| ||||| |||  || ||||||||||  ||||||| || ||| | ||||||| || |||||||||||||    
T  25258325 tttttcatattttttaagaaaagttgttagtgcaattaatgtgtctattttatgtcttgatattaccaaattgtcctttgtttgtatgt 25258413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 34102331 - 34102419
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||| |||||||||||||  || ||| | ||| ||||||||||| ||| |||||||||| |  ||||||||  |||||||||||||    
T  34102331 tttttcaaattttttaagaaaaattttcattgtaattaatgtgtctgttttgtgtgttaatattatcaaattattctttgtttgtatgt 34102419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 52141290 - 52141195
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatg--tgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||||||||||||  || | ||| ||| |||||  |||||  ||| |||||||||| |  |||||||||||||||||||||||    
T  52141290 ttgcttttttcacattttttaagaaaaattattagtgtaattaatgcgtgtctattttgtgtgttaatattatcaaattatcttttgtttgtatgt 52141195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 29302578 - 29302527
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagt 272  Q
    ||||| |||| ||||||| |||||||||||||| |||||||| |||||||||    
T  29302578 ttaatgtaggcatccattccctttttcacatttcttaagaaaagttgtcagt 29302527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 12845102 - 12845040
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgt 296  Q
    ||||||| |||||||||||| ||||||||||||||| ||  |  |||||||| ||||||||||    
T  12845102 ccattgcatttttcacatttcttaagaaatgttgtctgtgcagttaatgtgtttgatttatgt 12845040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 330
Target Start/End: Complemental strand, 44653002 - 44652881
Alignment:
Q  206 tactccatctgtcatttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatact 305  Q
    |||||| || ||| |||||| |||  || ||||||| ||||||||||| ||||||||||||   ||| ||| ||||||||||| ||| ||| |||||| |    
T  44653002 tactccctccgtcctttaatgtagccattcattgccattttcacatttcttaagaaatgtt---agtgtaattaatgtgtctgttttgtgttttaatatt 44652906  T
Q  306 gccaaattatcttttgtttgtatgt 330  Q
     ||| ||| |  |||||||||||||    
T  44652905 accacattgttctttgtttgtatgt 44652881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 47643536 - 47643623
Alignment:
Q  241 ctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||| |||||||| ||||||||| ||| |||||||| ||  || |||||||||| | | ||||| || |||||||| ||||    
T  47643536 ctttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtatg--ttttgtgttaatattactaaattgtcctttgtttgcatgt 47643623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 31305308 - 31305401
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| |||||  || ||| ||||||||||  ||| | || ||||| | ||||||| || |||||||||||||    
T  31305308 ttgcttttttcacatttattaagaaaagttgttggtgtaattaatgtgtctattttgtatgctaatattaccaaattgtcctttgtttgtatgt 31305401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 35001399 - 35001318
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaat 302  Q
    ||||| |||| | |||||| ||||||||||||| |||||||| ||||||||| |||  ||  |||||| ||| |||||||||    
T  35001399 ttaatctaggcacccattgtctttttcacatttattaagaaaagttgtcagtgtaatcaaaatgtctgttttgtgtgttaat 35001318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 41737115 - 41737208
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| ||| ||||| || |||||||| ||||| ||| ||| |||  |||||  ||| |||||||||| | ||||||| ||||||||||||||||    
T  41737115 ttgcatttatcacacttcttaagaaaagttgttagtgtaattaaaatgtctattttgtgtgttaatattaccaaattgtcttttgtttgtatgt 41737208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 331
Target Start/End: Original strand, 3831038 - 3831131
Alignment:
Q  236 attgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgta 331  Q
    ||||| ||||||||||||||||||||| ||| ||||  | | |||||| |||  ||| |||||||||| | | ||||| || ||||||||||||||    
T  3831038 attgcatttttcacattttttaagaaaagttatcag--ttattaatgtatctattttgtgtgttaatattacgaaattgtcatttgtttgtatgta 3831131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 10842324 - 10842410
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||| | |  || |||| ||||| |||| |||||||||| | |||||||||| |||||||||||||    
T  10842324 tttttcacatttcttaagaaaagttgttaatgcaattaatatgtct-attt-tgtgttaatattaccaaattatcgtttgtttgtatgt 10842410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 32152153 - 32152241
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| |||||  ||  || ||||||||||  ||| |||||||||| | ||||||| |  |||||||||||||    
T  32152153 tttttcacatttcttaagaaaagttgttggtgcaattaatgtgtctattttgtgtgttaatattaccaaattgttatttgtttgtatgt 32152241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 44163227 - 44163315
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||| ||| ||| ||||| ||| |||||||| || ||| |||||||||| |   ||||| || |||||||||||||    
T  44163227 tttttcacatttcttaaaaaaagttatcagtgtaattaatgtgtttgttttgtgtgttaatattattaaattgtcatttgtttgtatgt 44163315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 330
Target Start/End: Original strand, 51996958 - 51997038
Alignment:
Q  250 attttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||| ||||||||| ||| |||| ||| || ||| |||||||||| | ||||||  || |||||||||||||    
T  51996958 atttcttaagaaaagttgtcagtgtaattaatttgtatgttttctgtgttaatattaccaaatcgtcctttgtttgtatgt 51997038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 328
Target Start/End: Complemental strand, 4089630 - 4089523
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| |||||||| ||||||||||||| |||||||| ||||||||| ||| ||||||||||| ||| |||||||||| | | ||||||||||||    
T  4089630 ttaatgtaggcatccattgactttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacgaaattatctttt 4089531  T
Q  321 gtttgtat 328  Q
    ||||||||    
T  4089530 gtttgtat 4089523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 36116296 - 36116405
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| || ||||| ||||||||||||| ||||||||||||||| || ||| ||||||||||| |||||||||||||| | | ||||| || |||    
T  36116296 ttaatgtaggcattcattgtctttttcacatttcttaagaaatgttgtcggtgtaattaatgtgtctgttttatgtgttaatattacgaaattgtcattt 36116395  T
Q  321 gtttgtatgt 330  Q
    ||||||||||    
T  36116396 gtttgtatgt 36116405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 37673725 - 37673821
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||| ||||||||||||| |||||||||||||| ||| ||| ||||||||||| ||| |||||||||| |   ||||| ||||||||||||||||    
T  37673725 ccattgtctttttcacatttcttaagaaatgttgtgagtgtaattaatgtgtctgttttgtgtgttaatattatgaaattgtcttttgtttgtatgt 37673821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 330
Target Start/End: Original strand, 1324697 - 1324792
Alignment:
Q  235 cattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||| ||| |||||||||  |  |||||| || |||||||||||||    
T  1324697 cattgcctttttcacatttcttaagaaatgttatcagtgtaattaatgtgtctgttttgtgtgttaatcttatcaaattgtcatttgtttgtatgt 1324792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 236 - 330
Target Start/End: Complemental strand, 48610251 - 48610157
Alignment:
Q  236 attgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||| ||||||||||||||||||||| ||||||| | ||| ||||||||||| ||| ||| |||||| | | ||||| ||||||||||||||||    
T  48610251 attgcatttttcacattttttaagaaaagttgtcactgtaattaatgtgtctgttttgtgtattaatattacgaaattgtcttttgtttgtatgt 48610157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 20123441 - 20123534
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||||||| ||| ||||||||||| ||| |||||||||| |  |||||| || |||||||||||||    
T  20123441 ttgcttttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattatcaaattgtcctttgtttgtatgt 20123534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 26632837 - 26632930
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||||||||||||  |||| ||| ||  ||||||||||  |||||||||||||| | | ||||||||||||||||||||||    
T  26632837 ttgcttttttcacattttttaagaaaaattgttagtgtagttaatgtgtctattttatgtgttaatattactaaattatcttttgtttgtatgt 26632930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 18122161 - 18122063
Alignment:
Q  232 atccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||| ||||||||||||| |||||||| ||||| ||| ||| || |||||||| |||||||||||||| | | ||||| || |||||||| ||||    
T  18122161 atccattgtctttttcacatttcttaagaaaagttgtgagtgtaattagtgtgtctgttttatgtgttaatattactaaattttcctttgtttgaatgt 18122063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 10685081 - 10685169
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||| |||| |||||||| ||| ||||| ||| ||||||||||| |||||||||||||| | | ||||| || |||||||||||||    
T  10685081 tttttcatatttcttaagaaaagttatcagtgtaattaatgtgtctgttttatgtgttaatattacgaaattgtcctttgtttgtatgt 10685169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 25750364 - 25750452
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||| ||| ||||||||| ||| ||||||||||| ||| |||||||||| | | ||||| || |||||||||||||    
T  25750364 tttttcacatttcttaaaaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacaaaattgtcatttgtttgtatgt 25750452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 37048031 - 37048119
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||| ||||| ||| ||||||||||| ||| |||||||||  | ||||||| || |||||||||||||    
T  37048031 tttttcacatttcttaagaaaagttatcagtgtaattaatgtgtctgttttgtgtgttaatgttcccaaattgtcctttgtttgtatgt 37048119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 330
Target Start/End: Complemental strand, 43465260 - 43465164
Alignment:
Q  235 cattgcctttttcacatttttt-aagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| ||||||||| ||||||| ||||| |||||||||| ||| ||||||||||| ||| ||||||| || |  |||||| ||||||||||||||||    
T  43465260 cattacctttttcatatttttttaagaagtgttgtcagtgtaattaatgtgtctgttttgtgtgttagtattttcaaattgtcttttgtttgtatgt 43465164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 49100659 - 49100755
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||| ||| | |||| | | ||||||||| ||| ||||||||||| |||||||||||||| | | ||||| || |||||||||||||    
T  49100659 ccattgcctttttcgcatctcttaaaataagttgtcagtgtaattaatgtgtctgttttatgtgttaatattacgaaattgtcctttgtttgtatgt 49100755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 324
Target Start/End: Complemental strand, 36726303 - 36726200
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| |||||||||||||||| ||| | |||||| ||||||| ||| ||| |||||||| || ||| |||||||||| | ||||||| || |||    
T  36726303 ttaatgtaggcatccattgcctttttcgcatctcttaagagatgttgttagtgtaattaatgtgtttgttttgtgtgttaatattaccaaattgtccttt 36726204  T
Q  321 gttt 324  Q
    ||||    
T  36726203 gttt 36726200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 324
Target Start/End: Original strand, 48193606 - 48193693
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgttt 324  Q
    |||| |||||||||||||||||||||  |||| ||| ||| ||||||||||  ||| |||||||||| | |||||||||| |||||||    
T  48193606 ttgcatttttcacattttttaagaaaaattgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaattatcctttgttt 48193693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 324
Target Start/End: Original strand, 48767539 - 48767642
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| | ||||||| |||||||||||| |||| ||| ||||||||| ||| ||||||||||| ||| |||||||||| | | ||||| || |||    
T  48767539 ttaatgtaggcacccattgcttttttcacatttcttaaaaaacgttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgtccttt 48767638  T
Q  321 gttt 324  Q
    ||||    
T  48767639 gttt 48767642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 10595211 - 10595120
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||||||||||| |||| |||||| ||| |||||||||  | | ||| | ||||||||||||||||    
T  10595211 ttgcgtttttcacatttcttaagaaaagttgtcagtataattaatatgtctgttttgtgtgttaat--tacgaaactgtcttttgtttgtatgt 10595120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 328
Target Start/End: Complemental strand, 37491728 - 37491642
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtat 328  Q
    |||||||||||| |||||||| ||||| |||  || ||||||||||  ||||| |||||||| | |||||||||| |||||||||||    
T  37491728 tttttcacatttcttaagaaaagttgttagtgcaattaatgtgtctattttatatgttaatattaccaaattatcctttgtttgtat 37491642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 21388233 - 21388326
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| ||||||||  ||||| || ||| ||||||||||| ||| |||||||||| | | ||||| || |||||||||||||    
T  21388233 ttgcttttttcacatttcttaagaaaatttgtcggtgtaattaatgtgtctgttttgtgtgttaatattactaaattgtcctttgtttgtatgt 21388326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 40263706 - 40263795
Alignment:
Q  241 ctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||||||||||| |||||| || ||| ||||||||||| |||   |||||||| | | ||||| || |||||||||||||    
T  40263706 ctttttcacattttttaagaaaagttgtcggtgtaattaatgtgtctgttttgattgttaatattacaaaattgtcatttgtttgtatgt 40263795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 2276686 - 2276598
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||| ||| ||||||||| ||  |||| |||||| ||| |||||||||| | ||||||| || |||||||||||||    
T  2276686 tttttcacatttcttaacaaaagttgtcagtgtagttaatttgtctgttttgtgtgttaatattaccaaattgtcctttgtttgtatgt 2276598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 21809756 - 21809668
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||||  | ||| ||||||||||| ||| |||||||||| | | ||||| || |||||||||||||    
T  21809756 tttttcacatttcttaagaaaagttgtcgatgtaattaatgtgtctgttttttgtgttaatattactaaattgtcctttgtttgtatgt 21809668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 29636154 - 29636078
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaatt 313  Q
    |||| |||| |||||||||||||||| ||||||| | ||| ||||||||||| ||| |||||||||| | |||||||    
T  29636154 ttgcattttacacattttttaagaaaagttgtcaatgtaattaatgtgtctgttttgtgtgttaatattaccaaatt 29636078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 6376242 - 6376154
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| ||||||||  |||| ||| ||| |||||| |||| ||| |||||||||| | | ||||| || |||||||||||||    
T  6376242 tttttcacatttcttaagaaaaattgttagtgtaattaatgtctctgttttgtgtgttaatattactaaattgtcatttgtttgtatgt 6376154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 21801165 - 21801077
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||||  | ||| ||||||||||| ||| |||||||||| | | ||||| || ||| |||||||||    
T  21801165 tttttcacatttcttaagaaaagttgtcgatgtaattaatgtgtctgttttgtgtgttaatattactaaattgtcatttatttgtatgt 21801077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 27213483 - 27213571
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||| |||  ||||||| |||||  ||| |||||||||| | | ||||| || |||||||||||||    
T  27213483 tttttcacatttcttaagaaaagttgttagtgcaactaatatgtctattttgtgtgttaatattactaaattgtcctttgtttgtatgt 27213571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 40211394 - 40211298
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||| |||||||| |||||||||||||  ||||  || ||| ||||||||||| ||| |||||||||| | | ||||| || ||| |||||||||    
T  40211394 ccattgtctttttcatattttttaagaaaaattgtttgtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgtcatttatttgtatgt 40211298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 46783950 - 46783862
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||| | |||  || ||||||||||   ||||||||||||| | ||||||| ||||||||| ||||||    
T  46783950 tttttcacatttcttaagaaaagttattagtgaaattaatgtgtctatcttatgtgttaatattaccaaattgtcttttgttcgtatgt 46783862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 330
Target Start/End: Original strand, 35128376 - 35128468
Alignment:
Q  236 attgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| ||||||||||||||  |||||| ||||||||| ||| |||| |||||| ||| |||||||||| |   ||||| || |||||||||||||    
T  35128376 attgtctttttcacatttt--aagaaaagttgtcagtgtaattaatatgtctgttttgtgtgttaatattatgaaattgtcctttgtttgtatgt 35128468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 328
Target Start/End: Original strand, 40740945 - 40741032
Alignment:
Q  241 ctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtat 328  Q
    ||||||||||||| |||||||| ||||| | | ||| |||| |||||  ||| |||||||||| | |||||||||| ||| |||||||    
T  40740945 ctttttcacatttcttaagaaaagttgttaatgtaattaatatgtctattttgtgtgttaatattaccaaattatcatttctttgtat 40741032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 25099025 - 25098963
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgt 296  Q
    ||||||| |||||||||||| |||| |||||||||| ||  |  |||||||||||||||||||    
T  25099025 ccattgcatttttcacatttcttaaaaaatgttgtctgtgcagttaatgtgtctgatttatgt 25098963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 35960364 - 35960462
Alignment:
Q  232 atccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||  |||||||||||  |||| |||  |||| |||| || ||||||||||  ||||||| || ||| | | ||||||||||||||||||||||    
T  35960364 atccattgtatttttcacattccttaaaaaaaattgttagtacaattaatgtgtctattttatgtatttatattactaaattatcttttgtttgtatgt 35960462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 23876028 - 23876121
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||| ||| ||||| ||| ||  |||| ||||   |||||||||||||| | | ||||| ||||||||||||||||    
T  23876028 ttgcttttttcacatttcttaaaaaaagttgttagtgtagttaatatgtccattttatgtgttaatattactaaattgtcttttgtttgtatgt 23876121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 28663752 - 28663840
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgta 331  Q
    |||||||||||| |||||||| ||||| | || || ||||||||||  ||| |||||||||| |  ||||||||  ||||||||||||||    
T  28663752 tttttcacatttcttaagaaa-gttgttaatacaattaatgtgtctattttgtgtgttaatattatcaaattattatttgtttgtatgta 28663840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 33181286 - 33181379
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| ||||||| |||| |||| ||||||||||||| ||  |||||||| || ||| | | |||||| | ||||||| || |||||||||||||    
T  33181286 ttgcatttttcatatttcttaaaaaatgttgtcagtgtagttaatgtgtttgttttgtatattaatattaccaaattgtcatttgtttgtatgt 33181379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 9718291 - 9718193
Alignment:
Q  232 atccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||| |||||||||||| |||||||||||||||||| ||| ||||||||||| ||| |||||||||| | |||||||||  |||||||||||||    
T  9718291 atccattgcatttttcacatttcttaagaaatgttgtcagtgtaattaatgtgtctgttttgtgtgttaatattaccaaattattctttgtttgtatgt 9718193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 8065189 - 8065093
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||| |||||||||||  ||||||||||||||||| ||| ||||||||||| ||| |||||||||| | |||||||||| |||||||||||||    
T  8065189 ccattgcccttttcacatttcctaagaaatgttgtcagtgtaattaatgtgtctgttttgtgtgttaatattaccaaattatcctttgtttgtatgt 8065093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 44274776 - 44274688
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||||||||||| ||||||| | ||| ||||||||||| |||||||||||||| ||||||||| || |||||||||||||    
T  44274776 tttttcacattttttaagaaaagttgtcaatgtaattaatgtgtctgttttatgtgttaatattgccaaattgtcatttgtttgtatgt 44274688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 17251091 - 17250982
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| ||| |||| |||||||||||||||||||||| ||||| ||||||| ||||||||||| ||| |||||||||| | | ||||| || |||    
T  17251091 ttaatgtaggtatctattgtctttttcacattttttaagaaaagttgttagtataattaatgtgtctgttttgtgtgttaatattacaaaattgtcattt 17250992  T
Q  321 gtttgtatgt 330  Q
    ||||||||||    
T  17250991 gtttgtatgt 17250982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 209 - 330
Target Start/End: Complemental strand, 31644584 - 31644463
Alignment:
Q  209 tccatctgtcatttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgcc 308  Q
    |||||| ||| |||||| |||| |||||||| |||||||||||||| ||||||| ||| ||||| ||| ||||||||||| ||| |||||||||| | |     
T  31644584 tccatccgtcctttaatgtaggcatccattgtctttttcacattttataagaaaagttatcagtttaattaatgtgtctgttttttgtgttaatattaca 31644485  T
Q  309 aaattatcttttgtttgtatgt 330  Q
    ||||| || |||||||||||||    
T  31644484 aaattgtcatttgtttgtatgt 31644463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 41665706 - 41665794
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||| ||| |||||||||| |  |||||| || |||||||||||||    
T  41665706 tttttcacatttcttaagaaatgttgtcagtgtaattaatgtgtctgttttgtgtgttaatagtatcaaattgtcctttgtttgtatgt 41665794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 28265065 - 28264971
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgta 331  Q
    |||| |||||||||||| |||||||| ||||||||| ||| |||||||| || ||| || ||||||| | ||||||| || ||||||||||||||    
T  28265065 ttgcttttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgcgttaatattaccaaattgtcatttgtttgtatgta 28264971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 329
Target Start/End: Complemental strand, 35241824 - 35241730
Alignment:
Q  235 cattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatg 329  Q
    |||||||||||| ||||||  |||||||||||||| || ||| ||||||||||| ||| | |||||||| |  ||||||||| ||||||||||||    
T  35241824 cattgccttttttacatttcataagaaatgttgtctgtgtaattaatgtgtctgttttgtttgttaatattatcaaattatcatttgtttgtatg 35241730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 45214716 - 45214809
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||||||| ||| ||||||||||| ||| |||||||||| |  ||||||  | |||||||||||||    
T  45214716 ttgcatttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattttcaaattgccctttgtttgtatgt 45214809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 330
Target Start/End: Original strand, 44424551 - 44424679
Alignment:
Q  202 agtctactccatctgtcatttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaa 301  Q
    |||||||||| || |||  ||||| |||| |  |||||| |||||||||||| |||||||| ||||| ||| ||| ||||||||||| ||| | ||||||    
T  44424551 agtctactccctccgtcccttaatgtaggcactcattgcatttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctgttttgtatgttaa 44424650  T
Q  302 tactgccaaattatcttttgtttgtatgt 330  Q
    || | | ||||| || |||||||||||||    
T  44424651 tattacgaaattgtcctttgtttgtatgt 44424679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 28733820 - 28733907
Alignment:
Q  241 ctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||||||||||||  ||||| || ||| ||||||||||| ||||  |||||||| | ||||||| || |||||||||||||    
T  28733820 ctttttcacattttttaagaaaaattgtcggtgtaattaatgtgtctgtttta--tgttaatattaccaaattgtcatttgtttgtatgt 28733907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 34329988 - 34330086
Alignment:
Q  232 atccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||| ||||||||||||| |||| ||| ||||| ||||||| ||||||  ||| ||| |||||||||| | | ||||| || |||||||||||||    
T  34329988 atccattgtctttttcacatttcttaaaaaaagttgttagtataattaatgtacctgttttgtgtgttaatattacaaaattgtcctttgtttgtatgt 34330086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 303
Target Start/End: Complemental strand, 1246542 - 1246461
Alignment:
Q  222 taatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    ||||||||| || ||||| ||||||||||||| |||| ||| ||||||||||||| ||| |||| || ||| ||||||||||    
T  1246542 taatataggtattcattgtctttttcacatttcttaaaaaaagttgtcagtataattaacgtgtttgttttgtgtgttaata 1246461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 303
Target Start/End: Original strand, 15851491 - 15851588
Alignment:
Q  206 tactccatctgtcatttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    |||||| ||||||  ||||| |||  ||| |||| ||||||||||||| |||||||| ||||| ||| ||| ||||||||||| ||| ||||||||||    
T  15851491 tactccctctgtcccttaatgtagacatctattgtctttttcacatttcttaagaaaagttgtgagtgtaattaatgtgtctgttttttgtgttaata 15851588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 17663615 - 17663708
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||| ||| ||| ||||||| ||  |||||||||||||| | | ||||| || |||||||||||||    
T  17663615 ttgcttttttcacatttcttaagaaaagttgttagtgtaattaatgtgcctattttatgtgttaatattactaaattgtcctttgtttgtatgt 17663708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 27297568 - 27297661
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| ||||||||   ||| ||| ||| ||||||||||| ||| |||||||||| | | |||||||| |||||||||||||    
T  27297568 ttgcttttttcacatttcttaagaaaaactgttagtgtaattaatgtgtctgttttgtgtgttaatattacaaaattatcctttgtttgtatgt 27297661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 3237716 - 3237807
Alignment:
Q  241 ctttttcacattttttaagaaa--tgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||||||||||||  |||| | | | ||| ||||||||||| ||| |||||||||| | | |||||||| |||||||||||||    
T  3237716 ctttttcacattttttaagaaaagtgttattaatgtaattaatgtgtctgttttgtgtgttaatattacaaaattatcctttgtttgtatgt 3237807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 13534411 - 13534471
Alignment:
Q  243 ttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    ||||||||||| |||||||||||||||||| ||| |||||||| || ||| ||||||||||    
T  13534411 ttttcacatttcttaagaaatgttgtcagtgtaattaatgtgtttgttttgtgtgttaata 13534471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 24774861 - 24774949
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||||||||||  || | ||| ||| |||||| |||  ||| |||||||||| | ||||||| ||||||||||||||||    
T  24774861 tttttcacattttttaagaaaatttattagtgtaattaatgtatctattttgtgtgttaatattaccaaattgtcttttgtttgtatgt 24774949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 331
Target Start/End: Complemental strand, 25731286 - 25731206
Alignment:
Q  251 ttttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgta 331  Q
    |||||||||||| ||| || |||||| |||| ||| || ||| |||||||||| |  ||||||||||||||||||||||||    
T  25731286 ttttttaagaaaagttatcggtataattaatatgtttggtttgtgtgttaatattatcaaattatcttttgtttgtatgta 25731206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 11459144 - 11459235
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtat 328  Q
    |||| |||||||||||| ||| |||| |||||| || ||| ||||||||||| ||| |||||||||| | | ||||| || |||||||||||    
T  11459144 ttgcttttttcacatttcttatgaaaagttgtcggtgtaaataatgtgtctgttttgtgtgttaatattactaaattgtcctttgtttgtat 11459235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 330
Target Start/End: Original strand, 37355030 - 37355120
Alignment:
Q  240 cctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||| |||||||| |||||  || ||| ||||||||||  ||| |||||||||| | | ||||| || |||||||||||||    
T  37355030 cctttttcacatttcttaagaaaagttgtttgtgtaattaatgtgtctcttttgtgtgttaatattacaaaattgtcatttgtttgtatgt 37355120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 26512062 - 26512155
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||| |||  |||| ||||||| |||||||| |  |||||||||||||| | | ||||| || |||||||||||||    
T  26512062 ttgcttttttcacatttcttaaaaaaaattgttagtataattaatgtgtttattttatgtgttaatattactaaattgtcctttgtttgtatgt 26512155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 4398632 - 4398545
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||| |||||| ||||| ||| ||| ||||||||||  ||| |||||||||| | | ||||| || |||||||||||||    
T  4398632 tttttcacattttt-aagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattacgaaattgtcatttgtttgtatgt 4398545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 20361979 - 20362067
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| ||||||||  |||| ||| ||  ||||||||||  |||||||||||||| | | ||||| || |||||||||||||    
T  20361979 tttttcacatttcttaagaaaaattgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgtttgtatgt 20362067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 44421445 - 44421533
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| ||||||||  |||||||| ||| |||||| |||| ||| | |||||||| | | ||||| || |||||||||||||    
T  44421445 tttttcacatttcttaagaaaaattgtcagtgtaattaatgtatctgttttgtttgttaatattactaaattgtcatttgtttgtatgt 44421533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 328
Target Start/End: Complemental strand, 35178923 - 35178816
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| | ||||||  |||||||||||| |||||||| ||||||||| ||  |||||||| || ||| |||| ||||| | | ||||| ||||||    
T  35178923 ttaatgtaggcacccattgtttttttcacatttcttaagaaaagttgtcagtgtagttaatgtgtatgttttgtgtgataatattacgaaattgtctttt 35178824  T
Q  321 gtttgtat 328  Q
     |||||||    
T  35178823 atttgtat 35178816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 328
Target Start/End: Original strand, 2131753 - 2131839
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtat 328  Q
    ||||| |||||| |||||||| ||||| |||  || |||  |||||  ||| |||||||||| | ||||||||||||||||||||||    
T  2131753 ttttttacatttcttaagaaaagttgttagtgcaattaacatgtctattttgtgtgttaatattaccaaattatcttttgtttgtat 2131839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 247656 - 247717
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    |||||||||||||||||| || ||||| ||| ||| ||||||||||  ||| ||||||||||    
T  247656 tttttcacattttttaaggaaagttgttagtgtaattaatgtgtctattttgtgtgttaata 247717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 14420688 - 14420761
Alignment:
Q  257 aagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||| ||||| ||| ||| ||||||||||| ||| |||||||||| | ||||||| || |||||||| ||||    
T  14420688 aagaaaagttgttagtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgtcctttgtttgcatgt 14420761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 27749508 - 27749569
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    |||||||||||| |||||||| ||||||||| ||| |||| |||||| ||| ||| ||||||    
T  27749508 tttttcacatttcttaagaaaagttgtcagtgtaattaatatgtctgttttgtgtattaata 27749569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 41865707 - 41865799
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| |||||  || ||| ||||||||||  ||| |||||||| | | ||||||||||  ||||||||||||    
T  41865707 ttgcttttttcacatttcttaagaaaagttgttggtctaattaatgtgtctattttgtgtgttaacattaccaaattatc-cttgtttgtatgt 41865799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 329
Target Start/End: Original strand, 21012844 - 21012936
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatg 329  Q
    |||| ||||||| |||| |||||||| ||||| |||  || |||||||| |  ||| |||||||||| |  ||||||||| ||||||||||||    
T  21012844 ttgcatttttcaaatttcttaagaaaagttgttagtgcaattaatgtgtttattttgtgtgttaatattatcaaattatcctttgtttgtatg 21012936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 38982144 - 38982092
Alignment:
Q  278 taatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||| |||| ||| |||||||||| | ||||||||| ||||||||||||||    
T  38982144 taatgtatctgttttgtgtgttaatattaccaaattattttttgtttgtatgt 38982092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 206 - 326
Target Start/End: Original strand, 34877626 - 34877746
Alignment:
Q  206 tactccatctgtcatttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatact 305  Q
    |||||| || ||| |||||| |||  || ||||||||||||||||||| |||||||||||||||||| ||| |||| |||||| ||| |||||||||| |    
T  34877626 tactccctccgtcctttaatgtagacattcattgcctttttcacatttcttaagaaatgttgtcagtgtaattaatttgtctgttttgtgtgttaatatt 34877725  T
Q  306 gccaaattatcttttgtttgt 326  Q
     |||||||||| |||||||||    
T  34877726 accaaattatcatttgtttgt 34877746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 235 - 330
Target Start/End: Complemental strand, 25017789 - 25017694
Alignment:
Q  235 cattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||| ||| |||||||||| | ||||||| || |||||||||||||    
T  25017789 cattgtctttttcacgtttcttaagaaatgttgtcagtataattaatgtgtctgttttgtgtgttaatattaccaaattgtcatttgtttgtatgt 25017694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 236 - 330
Target Start/End: Original strand, 10933996 - 10934090
Alignment:
Q  236 attgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||| | |||||||| | |||||||||  |||||||||||||    
T  10933996 attgcctttttcacattttttcagaaatgttgtcagtgtaattaatgtgtctgttttgtatgttaatattaccaaattattctttgtttgtatgt 10934090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 27798142 - 27798240
Alignment:
Q  232 atccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||  |||||||||||||||||||||| |||||||| ||| |||| |||||| ||| |||||||||| |  ||||||||| |||||||||||||    
T  27798142 atccattgtatttttcacattttttaagaaatattgtcagtgtaattaatttgtctgttttgtgtgttaatattatcaaattatcatttgtttgtatgt 27798240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 27587834 - 27587922
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||||||||||| ||||||||||| ||| |||||||||| | | ||||| || ||||| |||||||    
T  27587834 tttttcacatttcttaagaaaagttgtcagtataattaatgtgtctgttttgtgtgttaatattactaaattgtcctttgtatgtatgt 27587922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 43060618 - 43060530
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||||||||||| ||| ||||| ||| ||| ||||||||||  ||| |||||||||| | ||| ||||||||||||||||||||    
T  43060618 tttttcacattttttaataaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattaccatattatcttttgtttgtatgt 43060530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 327
Target Start/End: Complemental strand, 9946487 - 9946381
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| || ||||| |||||||||||||||||| ||| ||||||  ||||| ||||||||||| |||| || |||||| | | |||||||| |||    
T  9946487 ttaatgtaggcattcattgtctttttcacattttttaataaaagttgtcgatataattaatgtgtctgttttacgtattaatattacgaaattatccttt 9946388  T
Q  321 gtttgta 327  Q
    |||||||    
T  9946387 gtttgta 9946381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 10523387 - 10523294
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| ||||||| ||||||||||||| ||| ||||| ||| ||||||||||| ||| |||||||||| | ||||||| | |||||||| |||||    
T  10523387 ttgcttttttcatattttttaagaaaagttatcagtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgttttttgtttttatgt 10523294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 27642493 - 27642586
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||| ||| ||  ||||||||||  |||||||||||||| | | |||||||| |||||||||||||    
T  27642493 ttgcttttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattatcctttgtttgtatgt 27642586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 3247390 - 3247294
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||||||||| |||||||| |||| |||| ||| |||| |||||| ||| | |||||||| | | ||||| || |||||||||||||    
T  3247390 ccattgcctttttcacatttcttaagaaaagttgacagtgtaattaatatgtctgttttgtatgttaatattacgaaattgtcctttgtttgtatgt 3247294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 35569113 - 35569025
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||| ||||| ||| ||||||||||| ||||||| |||||| | | |||||||  |||||||||||||    
T  35569113 tttttcacatttcttaagaaaagttatcagtgtaattaatgtgtctgttttatgtattaatattactaaattattctttgtttgtatgt 35569025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 5845157 - 5845260
Alignment:
Q  227 tagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgt 326  Q
    |||| ||||||||||||||||| |||| ||||||| |||||||||| ||| |||||| | || ||| ||| |||||| |  |||||| || |||||||||    
T  5845157 taggcatccattgcctttttcatatttcttaagaattgttgtcagtgtaattaatgtatttgttttgtgtattaatattatcaaattgtcatttgtttgt 5845256  T
Q  327 atgt 330  Q
    ||||    
T  5845257 atgt 5845260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 330
Target Start/End: Complemental strand, 15898570 - 15898483
Alignment:
Q  243 ttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||| ||| |||||||| ||||||||| ||| ||||||||||| ||| |||||||||| |  |||||| || |||||||||||||    
T  15898570 ttttcacttttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattatcaaattgtcctttgtttgtatgt 15898483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 21912111 - 21912204
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||| ||| ||  ||||||||||  |||||||||||||| |   ||||| ||||||||||||||||    
T  21912111 ttgcttttttcacatttattaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattattaaattgtcttttgtttgtatgt 21912204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 36177267 - 36177376
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| ||| |||| |||||| |||||| |||||||| ||| ||||| ||| ||||||||||  ||| |||||||||| | | ||||| || |||    
T  36177267 ttaatgtaggcatctattgtcttttttacatttcttaagaaaagttatcagtgtaattaatgtgtctattttgtgtgttaatattacaaaattgtcattt 36177366  T
Q  321 gtttgtatgt 330  Q
    ||||||||||    
T  36177367 gtttgtatgt 36177376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 39690599 - 39690506
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||| ||| ||  ||||||||||  |||||||||||||| | | ||||| || |||||||||||||    
T  39690599 ttgcttttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgtttgtatgt 39690506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 3559135 - 3559047
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| ||||||||  ||||  |||||| ||||||||||  ||| |||||||||| | ||||||| || |||||||||||||    
T  3559135 tttttcacatttcttaagaaaaattgttggtataattaatgtgtctattttgtgtgttaatattaccaaattgtcctttgtttgtatgt 3559047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 38972234 - 38972147
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||| ||| ||| |||||||||| |||||  |||||||| | ||||||| || |||||||||||||    
T  38972234 tttttcacatttcttaagaaaagttgttagtgtaattaatgtgtct-atttaaatgttaatattaccaaattgtcctttgtttgtatgt 38972147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 4738616 - 4738687
Alignment:
Q  232 atccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    |||||||| ||||||||||||| ||||||||| |||||||| ||| |||||| | || ||| ||||||||||    
T  4738616 atccattgtctttttcacatttcttaagaaatattgtcagtgtaattaatgtatttgttttgtgtgttaata 4738687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 12895319 - 12895229
Alignment:
Q  242 tttttcacattttttaa--gaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||||||||  || | |||||| || ||| ||||||||||| ||| ||| |||||| | ||||||| ||||||||||||||||    
T  12895319 tttttcacattttttaaaagagaagttgtcggtgtaattaatgtgtctgttttgtgtattaatattaccaaattgtcttttgtttgtatgt 12895229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 327
Target Start/End: Complemental strand, 21575009 - 21574903
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatctttt 320  Q
    ||||| |||| | |||||| ||||||||||||| |||||||||||| | ||| ||  ||||||||||  ||| | |||||||| | ||||||| || |||    
T  21575009 ttaatgtaggcacccattgtctttttcacatttcttaagaaatgtttttagtgtacttaatgtgtctattttgtatgttaatattaccaaattgtccttt 21574910  T
Q  321 gtttgta 327  Q
    |||||||    
T  21574909 gtttgta 21574903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 15967257 - 15967148
Alignment:
Q  206 tactccatctgtcatttaatatagggatccattgccttttt-cacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatac 304  Q
    |||||| || ||| |||||| |||  || |||||||||||| ||||||| |||||||| |||||| || ||| ||||||||||| ||| ||| ||||||     
T  15967257 tactccttccgtcctttaatgtagacattcattgccttttttcacatttcttaagaaaggttgtcggtgtaattaatgtgtctgttttgtgtattaatat 15967158  T
Q  305 tgccaaatta 314  Q
    | ||||||||    
T  15967157 taccaaatta 15967148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 16969367 - 16969431
Alignment:
Q  239 gcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    |||||||||||||||||||| |||  |||| ||||||| |||||||||| |||| | ||||||||    
T  16969367 gcctttttcacattttttaacaaaaattgttagtataattaatgtgtctaatttgtttgttaata 16969431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 20946073 - 20946171
Alignment:
Q  232 atccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||| ||||||| |||| |||||||| ||||| |||  || ||| ||||||  ||| |||||||||| |  |||||| || |||||||||||||    
T  20946073 atccattgcatttttcatatttcttaagaaacgttgttagtgcaattaacgtgtctattttgtgtgttaatattatcaaattgtcatttgtttgtatgt 20946171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 7510602 - 7510663
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    ||||||||||||||||||||| ||| | ||| ||| |||||||| || ||| ||||||||||    
T  7510602 tttttcacattttttaagaaaagttattagtgtaattaatgtgtatgttttgtgtgttaata 7510663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 29866185 - 29866273
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||| |||  || |||| |||||  ||| |||||||||| | |||| || || |||||||||||||    
T  29866185 tttttcacatttcttaagaaaagttgttagtgcaattaatatgtcttttttgtgtgttaatattaccaagttgtcctttgtttgtatgt 29866273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 330
Target Start/End: Original strand, 43453986 - 43454066
Alignment:
Q  250 attttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||| ||| ||||| ||||||| ||||||||| | ||| | |||||||| |  |||| ||||||||||||||||||    
T  43453986 atttcttaaaaaaagttgttagtataattaatgtgtcagttttgtatgttaatattatcaaactatcttttgtttgtatgt 43454066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 330
Target Start/End: Complemental strand, 34513365 - 34513240
Alignment:
Q  205 ctactccatctgtcatttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatac 304  Q
    ||||||||||| ||  ||||| ||||  |||||||  ||||| |||||||||||||||  ||||||| |||| ||||||||||| ||| ||||||||||     
T  34513365 ctactccatctatctcttaatgtaggcgtccattgttttttttacattttttaagaaaatttgtcagcataaataatgtgtctgttttgtgtgttaatat 34513266  T
Q  305 tgccaaattatcttttgtttgtatgt 330  Q
    | | |||||||| |||||||||||||    
T  34513265 tacgaaattatcctttgtttgtatgt 34513240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 330
Target Start/End: Original strand, 9461282 - 9461377
Alignment:
Q  235 cattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||| ||||||||||||| ||||||||||||||| || ||| |||||||| || |||||||||||||| | | |||||||  |||||||||||||    
T  9461282 cattgtctttttcacatttattaagaaatgttgtcggtgtaattaatgtgtttgttttatgtgttaatattactaaattattctttgtttgtatgt 9461377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 242 - 328
Target Start/End: Original strand, 16327119 - 16327205
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtat 328  Q
    |||||||||||| |||||||| ||||||| ||||| ||||||||||| ||| |||||||||| | ||||||| || |||||||||||    
T  16327119 tttttcacatttcttaagaaaagttgtcaatataattaatgtgtctgttttgtgtgttaatattaccaaattgtcatttgtttgtat 16327205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 330
Target Start/End: Original strand, 11302845 - 11302939
Alignment:
Q  236 attgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| ||||||||||||| |||||||| ||||| ||||||| ||||||||||| ||| |||||||||| | | ||||| || |||||||| ||||    
T  11302845 attgtctttttcacatttcttaagaaaagttgttagtataattaatgtgtctgttttttgtgttaatattacaaaattgtcctttgtttgcatgt 11302939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 328
Target Start/End: Original strand, 16350517 - 16350603
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtat 328  Q
    ||||||||||||||||| ||| ||||||||| ||| ||||| ||||| ||| |||||||||| | ||||||| || |||||||||||    
T  16350517 tttttcacattttttaataaaagttgtcagtgtaattaatgagtctgttttgtgtgttaatattaccaaattgtcatttgtttgtat 16350603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 1763804 - 1763897
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| ||||||| |||| |||||||| ||||||||| ||| ||||||||||| ||| |||||||||| | | ||||| || |||||||||||||    
T  1763804 ttgcttttttcatatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattactaaattgtcctttgtttgtatgt 1763897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 22410953 - 22410865
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||| ||| ||| ||||||||||| ||| | |||||||| | ||||||| |||||| |||||||||    
T  22410953 tttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctgttttttatgttaatattaccaaattgtcttttatttgtatgt 22410865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 19838922 - 19839015
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||||| ||||| ||| ||  ||||||||||  |||||||||||||| | | ||||| || |||||||||||||    
T  19838922 ttgcttttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgtttgtatgt 19839015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 12514695 - 12514607
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||| ||||||||||  |||| |||  || ||||||||||  ||| |||||||||| | ||||||| ||||||||||||||||    
T  12514695 tttttcacatattttaagaaaaattgttagtgcaattaatgtgtctattttgtgtgttaatattaccaaattgtcttttgtttgtatgt 12514607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 15981790 - 15981878
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| |||||  || ||| ||||||||||| ||| |||||||||| | ||||||| || || ||||||||||    
T  15981790 tttttcacatttcttaagaaaagttgttggtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgtcattagtttgtatgt 15981878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 30466078 - 30465990
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||| |||||| |||| ||| |||||| || ||| |||| ||| || ||| |||||||||| | ||||||||||||||||||||||||    
T  30466078 ttttttacatttcttaacaaaagttgtcggtgtaattaatatgtttgttttgtgtgttaatattaccaaattatcttttgtttgtatgt 30465990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 303
Target Start/End: Original strand, 5895706 - 5895788
Alignment:
Q  221 ttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    ||||| |||| |||||||| ||||||||||||| |||||||| ||||| | | ||| ||||||||||| ||| ||| ||||||    
T  5895706 ttaatgtaggcatccattgtctttttcacatttcttaagaaaagttgttaatgtaattaatgtgtctgttttgtgtattaata 5895788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 27441766 - 27441828
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgt 296  Q
    ||||||| |||||||||||| ||||||||||||||| ||  |  |||||||||||||||||||    
T  27441766 ccattgcatttttcacatttattaagaaatgttgtctgtgcagttaatgtgtctgatttatgt 27441828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 303
Target Start/End: Complemental strand, 4250804 - 4250707
Alignment:
Q  206 tactccatctgtcatttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaata 303  Q
    |||||| ||||||  ||||| |||| ||  |||| |||||| |||||| ||||||||  |||||||| ||| ||||||||||| ||| ||||||||||    
T  4250804 tactccctctgtcccttaatgtaggtatttattgtcttttttacatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttgtgtgttaata 4250707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 31946022 - 31945934
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| ||||||||  |||| ||| ||| ||||||||||  ||| |||||||||| | ||||||| || ||||||| |||||    
T  31946022 tttttcacatttcttaagaaaatttgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaattgtcgtttgtttatatgt 31945934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 197558 - 197473
Alignment:
Q  245 ttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    ||||||||| |||||||| ||| ||||||||| |||||||| || ||| ||||| |||| |   ||||| || |||||||||||||    
T  197558 ttcacatttcttaagaaaagttatcagtataattaatgtgtttgttttgtgtgtcaatattattaaattgtcatttgtttgtatgt 197473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 3308026 - 3307965
Alignment:
Q  235 cattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgt 296  Q
    |||||| |||||||||||| ||||||||| ||||| ||  |  |||||||||||||||||||    
T  3308026 cattgcatttttcacatttcttaagaaatattgtctgtgcagttaatgtgtctgatttatgt 3307965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 330
Target Start/End: Complemental strand, 5084673 - 5084559
Alignment:
Q  220 tttaatatagggatccattgcctttttcacattttttaagaaatgttgtcagtataact----aatgtgtctgatttatgtgttaatactgccaaattat 315  Q
    ||||||||||| ||| |||| | ||||||||||| |||||||| ||||| ||| ||| |    ||||||| || ||| |||||||||| |  |||||| |    
T  5084673 tttaatataggcatctattgtccttttcacatttcttaagaaaagttgttagtgtaattaataaatgtgtttgttttgtgtgttaatattatcaaattgt 5084574  T
Q  316 cttttgtttgtatgt 330  Q
    | |||||||||||||    
T  5084573 cctttgtttgtatgt 5084559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 9428163 - 9428252
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgta 331  Q
    |||||||| ||| |||||||| ||||  | ||||| |||||| |||  ||| |||||||||| |  ||||||||| ||||||||||||||    
T  9428163 tttttcacgtttcttaagaaaagttgctactataattaatgtatctattttgtgtgttaatattatcaaattatcatttgtttgtatgta 9428252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 31536007 - 31536096
Alignment:
Q  241 ctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||| |||||| |||||||| ||||| ||| ||| |||| | |||  ||||| |||||||| |  ||||||||||||||||| |||||    
T  31536007 cttttttacatttcttaagaaaagttgttagtgtaattaatatatctattttatttgttaatattatcaaattatcttttgtttatatgt 31536096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1091 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1091
Description:

Target: scaffold1091; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 2027 - 1934
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| |||||||||||| |||||| | ||||| ||| ||| ||||||||||  ||| |||||||||| | |||||||||| |||||||||||||    
T  2027 ttgcttttttcacatttcttaagataagttgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaattatcctttgtttgtatgt 1934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 214614 - 214702
Alignment:
Q  242 tttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||||||||||| |||||||| ||||| ||| ||| ||||||||||  ||| |||||||||| | ||||||| || |||||||||||||    
T  214614 tttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctagtttttgtgttaatattaccaaattgtcatttgtttgtatgt 214702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 45595 - 45533
Alignment:
Q  234 ccattgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgt 296  Q
    ||||||| |||||||||||| |||| |||||||||| ||  |  |||||||||||||||||||    
T  45595 ccattgcatttttcacatttattaataaatgttgtctgtgcagttaatgtgtctgatttatgt 45533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 99931 - 99838
Alignment:
Q  237 ttgcctttttcacattttttaagaaatgttgtcagtataactaatgtgtctgatttatgtgttaatactgccaaattatcttttgtttgtatgt 330  Q
    |||| ||||||| |||| |||||||| ||||| |||  |||| ||||||||  ||| |||||||||| | | ||||| ||||||||||| ||||    
T  99931 ttgcatttttcatatttgttaagaaaagttgttagtgcaacttatgtgtctattttgtgtgttaatattacgaaattgtcttttgtttgaatgt 99838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University