View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9012_high_3 (Length: 340)
Name: NF9012_high_3
Description: NF9012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9012_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 183 - 340
Target Start/End: Original strand, 4774941 - 4775098
Alignment:
| Q |
183 |
tttggggttaataccttaaataaacactaatttagcaatgactgattttcttaaaaggctnnnnnnntgatatattaacaaatcaggatcaactgtctca |
282 |
Q |
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| T |
4774941 |
tttggggttaatatcttaaataaacactaatttagcaatgactgattttcttaaaaggctaaaaaaatggtatattaacaaatcaggatcaactgtttca |
4775040 |
T |
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| Q |
283 |
gcataggtgtacgaaaccatcccatcaagattacagaaacatgcaactggtcaagttc |
340 |
Q |
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| T |
4775041 |
gcataggtgtacgaaaccaacccatcaagattagagaaacatgcaactggtcaagttc |
4775098 |
T |
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Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 4774760 - 4774870
Alignment:
| Q |
1 |
acatttcgcaggagataatctcttccccttacttaaatgcatcaatgtctttcttttaagaatcgatatcaatttttgtttacggaacaataaaataaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4774760 |
acatttcgcaggagataatctcttccccttacttaaatgcatcaatgtctttcttttaagaatcgatatcaatttttgtttacggaacaataaaataaac |
4774859 |
T |
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| Q |
101 |
cgtttccttca |
111 |
Q |
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| T |
4774860 |
cgtttccttca |
4774870 |
T |
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