View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9012_high_5 (Length: 270)
Name: NF9012_high_5
Description: NF9012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9012_high_5 |
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| [»] scaffold0071 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: scaffold0071 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 5778 - 5518
Alignment:
| Q |
12 |
gacatcacaaacggtaaaagtttttgcagaacttagattatttagnnnnnnncttatgctgtaattttcttatgaatacccatagcggtctcagaatttt |
111 |
Q |
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| T |
5778 |
gacatcacaaacggtaaaagtttttgcagaacttagattatttagtttttttcttatgctgtaattttcttatgaatacccatagcggtctcagaatttt |
5679 |
T |
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| Q |
112 |
gttatgcaataaacagatgatattctggaccgttccaccagcagaagaaaacata--cttacgcccattccaccaggaaaatatgtccttaaaccacggc |
209 |
Q |
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| T |
5678 |
gttatccaataaacagatgatattctggatcgttccaccagcagaagaaaacataaacttacgcccattccaccaggaaaatatgtccttaaaccacgac |
5579 |
T |
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| Q |
210 |
aactaggatgcaaaggtgaccgcagtcgtagtattgggttgtctgaaagccgtgatgaagg |
270 |
Q |
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| T |
5578 |
aactaggatgcaaaggtgaccgcagtcgtagtattgggtggtctgaaagccgtgatgaagg |
5518 |
T |
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Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 15456413 - 15456673
Alignment:
| Q |
12 |
gacatcacaaacggtaaaagtttttgcagaacttagattatttagnnnnnnncttatgctgtaattttcttatgaatacccatagcggtctcagaatttt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15456413 |
gacatcacaaacggtaaaagtttttgcagaacttagattatttagtttttttcttatgctgtaattttcttatgaatacccatagcggtctcagaatttt |
15456512 |
T |
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| Q |
112 |
gttatgcaataaacagatgatattctggaccgttccaccagcagaagaaaacata--cttacgcccattccaccaggaaaatatgtccttaaaccacggc |
209 |
Q |
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| T |
15456513 |
gttatccaataaacagatgatattctggatcgttccaccagcagaagaaaacataaacttacgcccattccaccaggaaaatatgtccttaaaccacgac |
15456612 |
T |
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| Q |
210 |
aactaggatgcaaaggtgaccgcagtcgtagtattgggttgtctgaaagccgtgatgaagg |
270 |
Q |
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| T |
15456613 |
aactaggatgcaaaggtgaccgcagtcgtagtattgggtggtctgaaagccgtgatgaagg |
15456673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 8160299 - 8160368
Alignment:
| Q |
13 |
acatcacaaacggtaaaagtttttgcagaacttagattatttagnnnnnnncttatgctgtaattttctt |
82 |
Q |
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||||||||||||||| || ||||||| |||||||| |||||||| ||||||||||||||||||| |
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| T |
8160299 |
acatcacaaacggtataattttttgctgaacttagtttatttagttttttccttatgctgtaattttctt |
8160368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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