View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9012_low_13 (Length: 268)
Name: NF9012_low_13
Description: NF9012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9012_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 8865643 - 8865400
Alignment:
| Q |
7 |
tgagatggacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
106 |
Q |
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| T |
8865643 |
tgagatgaacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
8865544 |
T |
|
| Q |
107 |
cgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgtatgttacaacacagcaagtactattacgttttataaaatctaga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8865543 |
cgaaagatatacaaccacataataaaattatttataccaaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga |
8865444 |
T |
|
| Q |
207 |
aaagtactattaagttttcagtatcacacagcaagtacagacca |
250 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
8865443 |
aaagtactattaagttttcagtatcacacagcaagaatagacca |
8865400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 11127114 - 11127351
Alignment:
| Q |
7 |
tgagatggacatcagcaagcaacctacacaacaagaa-gcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaa |
105 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11127114 |
tgagatgaacatcagcaagcaacctacacaacaagaaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgatgaa |
11127213 |
T |
|
| Q |
106 |
gcgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgtatgttacaacacagcaagtactattacgttttataaaatctag |
205 |
Q |
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| T |
11127214 |
gcgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctag |
11127313 |
T |
|
| Q |
206 |
aaaagtactattaagttttcagtatcacacagcaagta |
243 |
Q |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
11127314 |
aaaagtaatattaagttttcagtatcacacagcaagta |
11127351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 10893256 - 10893057
Alignment:
| Q |
7 |
tgagatggacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
106 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10893256 |
tgagatgaacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
10893157 |
T |
|
| Q |
107 |
cgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgtatgttacaacacagcaagtactattacgttttataaaatctaga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10893156 |
cgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga |
10893057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 11144811 - 11144983
Alignment:
| Q |
7 |
tgagatggacatcagcaagcaacctacacaacaagaagcaagtat---gagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgagg |
103 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| |||| |||||| |||||||| ||| | |||| |
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| T |
11144811 |
tgagatgaacatcagcaagcaacctacaccacaagaagcaagtattatgagtccaggaaaagcgaaagagcagtggcggaacttgaataattttacgagg |
11144910 |
T |
|
| Q |
104 |
aagcgaaagatatacaaccacataataaaattatt--tatactgaatatgtaataaaatgtatgttacaacac |
174 |
Q |
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||| ||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| |||||||||||| |
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| T |
11144911 |
aagtgaaagatatacaaccgcataataaaattatttatataccaaatatgtaataaaatgaatgttacaacac |
11144983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 11155989 - 11156158
Alignment:
| Q |
7 |
tgagatggacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
106 |
Q |
| |
|
||||||| |||||| |||||||||| ||||||||||| |||||||||| |||||||||| |||| |||| || ||| |||||||| ||| | ||||||| |
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| T |
11155989 |
tgagatgaacatcaacaagcaacctgcacaacaagaaacaagtatgaggccaggaaaagcgaaagagcagtggtggaacttgaataattttacgaggaag |
11156088 |
T |
|
| Q |
107 |
cgaaagatatacaaccacataataaaattatt--tatactgaatatgtaataaaatgtatgttacaacac |
174 |
Q |
| |
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||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |
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| T |
11156089 |
tgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacac |
11156158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 11156188 - 11156241
Alignment:
| Q |
197 |
aaaatctagaaaagtactattaagttttcagtatcacacagcaagtacagacca |
250 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |
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|
| T |
11156188 |
aaaatcaagaaaagtactagtaagttttcagtatcacacagcaagtatagacca |
11156241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 11145013 - 11145066
Alignment:
| Q |
197 |
aaaatctagaaaagtactattaagttttcagtatcacacagcaagtacagacca |
250 |
Q |
| |
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|||||| |||||||||||| |||| ||||||||||||||||||||| ||||||| |
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| T |
11145013 |
aaaatcaagaaaagtactaataagctttcagtatcacacagcaagtgcagacca |
11145066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 11193178 - 11193133
Alignment:
| Q |
197 |
aaaatctagaaaagtactattaagttttcagtatcacacagcaagt |
242 |
Q |
| |
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|||||| |||||||||||| |||||||||||||| ||||||||||| |
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| T |
11193178 |
aaaatcaagaaaagtactactaagttttcagtattacacagcaagt |
11193133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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