View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9012_low_14 (Length: 250)
Name: NF9012_low_14
Description: NF9012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9012_low_14 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 75616 - 75838
Alignment:
| Q |
19 |
tagttaatgtgactcactcatattctgttctgacaaaagaattctaatctcaaaagaggggctcttgcaaaagagtttgattttgcannnnnnnnnaaat |
118 |
Q |
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| T |
75616 |
tagttaatgtgactcactcatattctgttctgacaaaagaattctaatctcaaaagaggggctcttgcaaaagagtttgattttgcatttttttttaaat |
75715 |
T |
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| Q |
119 |
gtttggtagaaaaatataatttgtatttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattt |
218 |
Q |
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| T |
75716 |
gtttggtagaaaaatataatttgtatttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattt |
75815 |
T |
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| Q |
219 |
tgttactattctcacaggttctg |
241 |
Q |
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| T |
75816 |
tgttactattctcacatgttctg |
75838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 28484766 - 28484679
Alignment:
| Q |
144 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc |
231 |
Q |
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| T |
28484766 |
tttagaatactcctttctttctagattgaggataacaaagggatatactaactgcacttcattcattttgtattttcttactattctc |
28484679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 29715238 - 29715155
Alignment:
| Q |
157 |
tttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacaggttct |
240 |
Q |
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| T |
29715238 |
tttctttctagattgacgataataaagggatatactaactgcacttcattcattttgtattttcttactattctcccatgttct |
29715155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 29797178 - 29797091
Alignment:
| Q |
144 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc |
231 |
Q |
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| T |
29797178 |
tttagaatactcctttctttctagattgaggataacaaagggatatactaactgcacttcattcattttgtattttcttactattctc |
29797091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 28500489 - 28500408
Alignment:
| Q |
144 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttact |
225 |
Q |
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| T |
28500489 |
tttagaatactcctctctttctagattgacgactagaaagggatttactaactacacttcattcattttgtattttcttact |
28500408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 29708079 - 29708014
Alignment:
| Q |
175 |
acaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacaggttct |
240 |
Q |
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| T |
29708079 |
acaagaaatggatttactaactgcactttattcattttgtattttcttagtattctcacatgttct |
29708014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 29812900 - 29812819
Alignment:
| Q |
144 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttact |
225 |
Q |
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| T |
29812900 |
tttagaatactcctctctttctagattgacgactagaaagggatttactaactacacttcattcattttgtattttcttact |
29812819 |
T |
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