View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9012_low_15 (Length: 242)

Name: NF9012_low_15
Description: NF9012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9012_low_15
NF9012_low_15
[»] chr6 (63 HSPs)
chr6 (19-233)||(28141080-28141294)
chr6 (29-168)||(29827541-29827680)
chr6 (29-168)||(2186369-2186508)
chr6 (29-156)||(28096952-28097079)
chr6 (26-156)||(28150724-28150854)
chr6 (30-166)||(29469759-29469895)
chr6 (31-120)||(26624816-26624905)
chr6 (31-120)||(26730793-26730882)
chr6 (28-155)||(29758956-29759083)
chr6 (29-155)||(28296241-28296367)
chr6 (29-155)||(28515706-28515832)
chr6 (29-154)||(26863123-26863248)
chr6 (29-134)||(28186955-28187060)
chr6 (28-120)||(26885633-26885725)
chr6 (29-112)||(26960677-26960760)
chr6 (26-121)||(27529845-27529940)
chr6 (28-119)||(27680513-27680604)
chr6 (29-100)||(27697148-27697219)
chr6 (28-155)||(29673519-29673646)
chr6 (30-100)||(26850277-26850347)
chr6 (24-85)||(25484603-25484664)
chr6 (24-85)||(26144412-26144473)
chr6 (31-166)||(28902153-28902288)
chr6 (29-100)||(29842548-29842619)
chr6 (30-100)||(27591574-27591644)
chr6 (30-100)||(27676173-27676243)
chr6 (26-100)||(27704822-27704896)
chr6 (35-97)||(31286114-31286176)
chr6 (24-85)||(25512435-25512496)
chr6 (30-87)||(26637193-26637250)
chr6 (30-87)||(26743159-26743216)
chr6 (35-155)||(26938581-26938701)
chr6 (26-166)||(27215998-27216138)
chr6 (33-153)||(28327037-28327157)
chr6 (33-153)||(28504673-28504793)
chr6 (28-100)||(28787804-28787876)
chr6 (28-100)||(28793925-28793997)
chr6 (37-168)||(26804018-26804149)
chr6 (28-119)||(29694932-29695023)
chr6 (30-100)||(25075432-25075502)
chr6 (31-85)||(25581273-25581327)
chr6 (28-146)||(26657525-26657643)
chr6 (28-146)||(26763496-26763614)
chr6 (30-88)||(26813102-26813160)
chr6 (30-100)||(27603254-27603324)
chr6 (26-100)||(27609679-27609753)
chr6 (26-100)||(27717058-27717132)
chr6 (44-122)||(29476608-29476686)
chr6 (28-85)||(25546531-25546588)
chr6 (28-85)||(26057470-26057527)
chr6 (28-85)||(26077440-26077497)
chr6 (29-86)||(26951295-26951352)
chr6 (26-97)||(26825374-26825445)
chr6 (33-100)||(27663762-27663829)
chr6 (33-87)||(25491879-25491933)
chr6 (26-100)||(26648019-26648093)
chr6 (26-100)||(26753987-26754061)
chr6 (43-121)||(29523458-29523536)
chr6 (33-86)||(26978936-26978989)
chr6 (31-112)||(28490040-28490121)
chr6 (31-112)||(29802450-29802531)
chr6 (34-164)||(29727451-29727581)
chr6 (28-88)||(27426186-27426246)
[»] chr1 (4 HSPs)
chr1 (29-155)||(26137434-26137560)
chr1 (33-155)||(5921979-5922101)
chr1 (28-120)||(266888-266980)
chr1 (27-100)||(28126243-28126316)
[»] chr5 (1 HSPs)
chr5 (26-166)||(16692410-16692550)
[»] chr2 (2 HSPs)
chr2 (27-155)||(17991704-17991832)
chr2 (39-130)||(3281218-3281309)
[»] scaffold0019 (1 HSPs)
scaffold0019 (29-155)||(56795-56921)
[»] chr8 (6 HSPs)
chr8 (28-155)||(12590286-12590413)
chr8 (29-166)||(16371627-16371764)
chr8 (29-119)||(16441599-16441689)
chr8 (37-151)||(35984859-35984973)
chr8 (37-165)||(31906614-31906742)
chr8 (33-155)||(16450445-16450567)
[»] scaffold0573 (1 HSPs)
scaffold0573 (31-166)||(7506-7641)
[»] chr3 (1 HSPs)
chr3 (28-155)||(615341-615468)
[»] scaffold1870 (1 HSPs)
scaffold1870 (28-97)||(332-401)
[»] scaffold0419 (1 HSPs)
scaffold0419 (28-97)||(9050-9119)
[»] scaffold0277 (2 HSPs)
scaffold0277 (31-120)||(3242-3331)
scaffold0277 (31-120)||(12205-12294)
[»] chr4 (8 HSPs)
chr4 (30-99)||(18688179-18688248)
chr4 (28-99)||(18730060-18730131)
chr4 (30-99)||(18678122-18678191)
chr4 (30-99)||(18697965-18698034)
chr4 (30-99)||(18722635-18722704)
chr4 (30-99)||(18654042-18654111)
chr4 (29-85)||(5089533-5089589)
chr4 (28-88)||(18075309-18075369)
[»] scaffold0012 (2 HSPs)
scaffold0012 (28-155)||(211631-211758)
scaffold0012 (28-166)||(238363-238502)
[»] scaffold0007 (3 HSPs)
scaffold0007 (35-166)||(67865-67996)
scaffold0007 (36-166)||(32519-32649)
scaffold0007 (36-166)||(37268-37398)
[»] scaffold0349 (1 HSPs)
scaffold0349 (26-100)||(2098-2172)
[»] scaffold0003 (1 HSPs)
scaffold0003 (28-88)||(61117-61177)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 63)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 28141080 - 28141294
Alignment:
Q  19 gttgtacttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28141080 gttgtacttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatg 28141179  T
Q  119 gttccataaagacatagtccaagttttagaagaaaatttggtgagtaagactggtatagatgttttttagtctttaacctttattttgtccctgttccat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28141180 gttccataaagacatagtccaagttttagaagaaaatttggtgagtaagactggtatagatgttttttagtctttaacctttattttgtccctgttccat 28141279  T
Q  219 ctgctgccaatgcct 233  Q
    |||||||||||||||    
T  28141280 ctgctgccaatgcct 28141294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 29827541 - 29827680
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaa 128  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||| || || ||||| || |||||| || ||    
T  29827541 tgtgacattacatgacttgatagaagacatgggtaaagaaattgtacgacaagaatcaccgaaagagcctggaaagcgtagtaggttgtggttctatgaa 29827640  T
Q  129 gacatagtccaagttttagaagaaaatttggtgagtaaga 168  Q
    || ||||| ||||| ||||||||||||| |||||||||||    
T  29827641 gatatagttcaagtcttagaagaaaattcggtgagtaaga 29827680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 2186369 - 2186508
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaa 128  Q
    ||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||| ||||| || |||| |||| ||    
T  2186369 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 2186468  T
Q  129 gacatagtccaagttttagaagaaaatttggtgagtaaga 168  Q
    || ||||| |  |||||| | | ||||| |||||||||||    
T  2186469 gatatagttcctgttttacatgcaaattcggtgagtaaga 2186508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 28097079 - 28096952
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaa 128  Q
    |||||||||||||||||||||||| || |||||||||||||||||  ||||||||||||||||||| ||||| ||||| || || || | ||||||| ||    
T  28097079 tgtgacattacatgacttgatagaagacatgggtaaagaaattgtaagacaagaatcaccaaaagaacctggaaaacgtagcaggttgtcgttccatgaa 28096980  T
Q  129 gacatagtccaagttttagaagaaaatt 156  Q
    || ||| | |||||||||||||||||||    
T  28096979 gatatatttcaagttttagaagaaaatt 28096952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 28150724 - 28150854
Alignment:
Q  26 ttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccat 125  Q
    |||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| || |  || || |||||| ||    
T  28150724 ttatgtaacattacatgacttgatagaagacatgggtaaagaaattgtacgacaagaatcaccaaaagagcctgggaagcgcaacaggttgtggttctat 28150823  T
Q  126 aaagacatagtccaagttttagaagaaaatt 156  Q
     |||| ||| | ||||||||||||| |||||    
T  28150824 gaagatatatttcaagttttagaaggaaatt 28150854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 29469759 - 29469895
Alignment:
Q  30 gtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaag 129  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||  |||| ||||| ||||| ||||| ||||||| |  |||||    
T  29469759 gtgacattacatgatttgatagaggatatggggaaagaaattgttagacaagaatcacctgaagatcctggaaaacgcagtaggttatggtcctctaaag 29469858  T
Q  130 acatagtccaagttttagaagaaaatttggtgagtaa 166  Q
    | ||| | ||||||||||||||||||  |||||||||    
T  29469859 atataattcaagttttagaagaaaatacggtgagtaa 29469895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 26624816 - 26624905
Alignment:
Q  31 tgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggt 120  Q
    |||| |||||||||||||||||||| |||||||||| ||| || |||||||||||||| |||||||||||  |||| |||||||||||||    
T  26624816 tgaccttacatgacttgatagaggacatgggtaaagcaatcgtccgacaagaatcacctaaagagcctggagaacgaagtagattatggt 26624905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 26730793 - 26730882
Alignment:
Q  31 tgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggt 120  Q
    |||| |||||||||||||||||||| |||||||||| ||| || |||||||||||||| |||||||||||  |||| |||||||||||||    
T  26730793 tgaccttacatgacttgatagaggacatgggtaaagcaatcgtccgacaagaatcacctaaagagcctggagaacgaagtagattatggt 26730882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 29759083 - 29758956
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataa 127  Q
    |||||||||| ||||| ||| ||||||| |||||||||||||||||| |||||||||| ||  |||| ||||| ||||| | ||||||||||||   |||    
T  29759083 atgtgacattgcatgatttggtagaggatatgggtaaagaaattgttagacaagaatcgcctcaagatcctggaaaacgcactagattatggttttctaa 29758984  T
Q  128 agacatagtccaagttttagaagaaaat 155  Q
     || ||| | ||||||||||||||||||    
T  29758983 tgatataatgcaagttttagaagaaaat 29758956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 28296367 - 28296241
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaa 128  Q
    |||||||||||||| |||||||||| | ||||||||||||||||| |   || |||| ||||||||||| || | ||| ||||| || ||||||||||||    
T  28296367 tgtgacattacatgccttgatagagaaaatgggtaaagaaattgtgcatgaaaaatctccaaaagagccaggaagacgtagtaggttgtggttccataaa 28296268  T
Q  129 gacatagtccaagttttagaagaaaat 155  Q
    |||||| | || || ||||||||||||    
T  28296267 gacataattcatgtcttagaagaaaat 28296241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 155
Target Start/End: Original strand, 28515706 - 28515832
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaa 128  Q
    |||||||||||||| |||||||||| | ||||||||||||||||| |   || |||| ||||||||||| || | ||| ||||| || ||||||||||||    
T  28515706 tgtgacattacatgccttgatagagaaaatgggtaaagaaattgtgcatgaaaaatctccaaaagagccaggaagacgtagtaggttgtggttccataaa 28515805  T
Q  129 gacatagtccaagttttagaagaaaat 155  Q
    |||||| | || || ||||||||||||    
T  28515806 gacataattcatgtcttagaagaaaat 28515832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 26863123 - 26863248
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaa 128  Q
    ||||| ||||||||||||||||||||| ||||| |||||||| || ||||||||||| || |||||||| ||  |||| ||||| |||||||  ||| |     
T  26863123 tgtgagattacatgacttgatagaggacatgggcaaagaaatcgtccgacaagaatctcctaaagagccgggtgaacgaagtaggttatggtgtcatgat 26863222  T
Q  129 gacatagtccaagttttagaagaaaa 154  Q
    || ||| |||| ||||||||||||||    
T  26863223 gatataatccacgttttagaagaaaa 26863248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 28186955 - 28187060
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaa 128  Q
    |||||| ||||||| |||||||||| | ||||||||||||||||| ||  |||| || |||||||||||||| | ||| ||||| || ||||||||||||    
T  28186955 tgtgacgttacatgccttgatagagaaaatgggtaaagaaattgtccggaaagagtctccaaaagagcctggaagacgtagtaggttgtggttccataaa 28187054  T
Q  129 gacata 134  Q
    ||||||    
T  28187055 gacata 28187060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 26885633 - 26885725
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggt 120  Q
    |||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||   |||||||||||  |||| ||||| |||||||    
T  26885633 atgtgacattacatgacttggtagaggacatgggtaaagaaatcgttcggcaagaatcaagtaaagagcctggagaacgtagtaggttatggt 26885725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 26960677 - 26960760
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtag 112  Q
    ||||||||||||||||||||||||||| |||||||  |||||||||||||| ||||||   ||||||||||| ||||| |||||    
T  26960677 tgtgacattacatgacttgatagaggatatgggtatggaaattgttcgacaggaatcaattaaagagcctggaaaacgcagtag 26960760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 27529940 - 27529845
Alignment:
Q  26 ttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggtt 121  Q
    |||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||||  | ||||||||  |||| ||||| || |||||    
T  27529940 ttatgtgacattacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcacccgatgagcctggagaacgcagtaggttgtggtt 27529845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 27680513 - 27680604
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatgg 119  Q
    |||||| |||||||||||||||| |||| |||||||||||| | || |||||||||||||| |||||||||||  |||| ||||| ||||||    
T  27680513 atgtgagattacatgacttgataaaggacatgggtaaagaagtcgtccgacaagaatcacctaaagagcctggagaacgaagtaggttatgg 27680604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 27697219 - 27697148
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    ||||||||||||||||||||||||||| |||||||||||| | || |||||||||||| | |||||||||||    
T  27697219 tgtgacattacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaactaaagagcctgg 27697148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 29673646 - 29673519
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataa 127  Q
    |||||||||||||||| ||| ||||||| ||||| |||||||||||| |||||||| ||||  |||| ||||| ||||| ||||| ||||||||     |    
T  29673646 atgtgacattacatgatttggtagaggatatgggaaaagaaattgttagacaagaagcacctgaagatcctggaaaacgtagtaggttatggttttccga 29673547  T
Q  128 agacatagtccaagttttagaagaaaat 155  Q
    ||| ||| | ||||||||||||||||||    
T  29673546 agatataattcaagttttagaagaaaat 29673519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 26850277 - 26850347
Alignment:
Q  30 gtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    |||||||||||||||||||||||||| |||||||||||||| || ||||||||||||   |||||||||||    
T  26850277 gtgacattacatgacttgatagaggacatgggtaaagaaatcgtccgacaagaatcaattaaagagcctgg 26850347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 25484603 - 25484664
Alignment:
Q  24 acttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatc 85  Q
    ||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  25484603 acttatgtgaccttacatgacttgatagaggacatgggtaaagaagtcgttcgacaagaatc 25484664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 26144412 - 26144473
Alignment:
Q  24 acttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatc 85  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||    
T  26144412 acttatgtgaccttacatgacttgatagaggacatgggtaaagaaatcgtccgacaagaatc 26144473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 166
Target Start/End: Original strand, 28902153 - 28902288
Alignment:
Q  31 tgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaaga 130  Q
    |||||||||||||  ||||||| || ||||| |||||||||||  ||| |||||||||| |  |||||||  |||| |||||||||||||    ||||||    
T  28902153 tgacattacatgatctgatagaagatatgggaaaagaaattgtcagactagaatcaccagatcagcctggagaacgcagtagattatggtctgctaaaga 28902252  T
Q  131 catagtccaagttttagaagaaaatttggtgagtaa 166  Q
    |||||   |||||||||||||||||  |||||||||    
T  28902253 catagctgaagttttagaagaaaatacggtgagtaa 28902288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 29842619 - 29842548
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    ||||||| |||||||||||||||| || ||||||||||||||||| |||| ||||||| | |||||||||||    
T  29842619 tgtgacactacatgacttgatagaagacatgggtaaagaaattgtacgaccagaatcaacgaaagagcctgg 29842548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 27591644 - 27591574
Alignment:
Q  30 gtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    |||||||||||||| ||||||||||  |||||||||||| | || |||||||||||||| |||||||||||    
T  27591644 gtgacattacatgaattgatagaggtcatgggtaaagaagtcgtccgacaagaatcacctaaagagcctgg 27591574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 27676243 - 27676173
Alignment:
Q  30 gtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    |||||||||||||| ||||||||||  |||||||||||| | || |||||||||||||| |||||||||||    
T  27676243 gtgacattacatgaattgatagaggtcatgggtaaagaagtggtccgacaagaatcacctaaagagcctgg 27676173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 27704896 - 27704822
Alignment:
Q  26 ttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    |||||||||||||||| ||||||||||||| |||||||||||| | || ||||||||||||   |||||||||||    
T  27704896 ttatgtgacattacataacttgatagaggatatgggtaaagaagtcgtccgacaagaatcaattaaagagcctgg 27704822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 31286114 - 31286176
Alignment:
Q  35 attacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcc 97  Q
    ||||||||||||||||||||| |||||||||||| | || |||||||||||||| ||||||||    
T  31286114 attacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcacctaaagagcc 31286176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 25512435 - 25512496
Alignment:
Q  24 acttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatc 85  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||  || |||||||||||    
T  25512435 acttatgtgaccttacatgacttgatagaggacatgggtaaagaaaccgtccgacaagaatc 25512496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 26637193 - 26637250
Alignment:
Q  30 gtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcac 87  Q
    |||||||||||||||||||||||||| ||||||| |||||| || |||||||||||||    
T  26637193 gtgacattacatgacttgatagaggatatgggtatagaaatcgtccgacaagaatcac 26637250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 26743159 - 26743216
Alignment:
Q  30 gtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcac 87  Q
    |||||||||||||||||||||||||| ||||||| |||||| || |||||||||||||    
T  26743159 gtgacattacatgacttgatagaggatatgggtatagaaatcgtccgacaagaatcac 26743216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 155
Target Start/End: Original strand, 26938581 - 26938701
Alignment:
Q  35 attacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaagacata 134  Q
    ||||||||||||||| ||||| |||||||||||||||||| |||||||||||   |||||| ||||  |||| | |||||| |||||  | ||||| |||    
T  26938581 attacatgacttgattgaggacatgggtaaagaaattgttagacaagaatcagtcaaagaggctggagaacgcactagattgtggtttgacaaagatata 26938680  T
Q  135 gtccaagttttagaagaaaat 155  Q
    || || || ||| ||||||||    
T  26938681 gttcatgtattaaaagaaaat 26938701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 166
Target Start/End: Original strand, 27215998 - 27216138
Alignment:
Q  26 ttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccat 125  Q
    |||| ||| ||||||||||||||||||||| ||||||| |||| |||| ||||||||||||||  |  | |||||| |||| ||||| || ||||| ||     
T  27215998 ttatatgagattacatgacttgatagaggatatgggtagagaagttgtccgacaagaatcacccgacaatcctggggaacgcagtaggttgtggtttcac 27216097  T
Q  126 aaagacatagtccaagttttagaagaaaatttggtgagtaa 166  Q
     | || ||||| |||||| || |||||||| | ||||||||    
T  27216098 gatgatatagttcaagttctaaaagaaaatatcgtgagtaa 27216138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 28327037 - 28327157
Alignment:
Q  33 acattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaagaca 132  Q
    |||||||||| ||| || ||| | || |||||||||||||||||||||||||| | |||||| ||||| ||| | ||||| || ||||| |||||||| |    
T  28327037 acattacatgccttaatggagcaaataggtaaagaaattgttcgacaagaatccctaaaagaacctggaaaatgtagtaggttgtggtttcataaagata 28327136  T
Q  133 tagtccaagttttagaagaaa 153  Q
    || | || || ||||||||||    
T  28327137 taattcatgtcttagaagaaa 28327157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 28504673 - 28504793
Alignment:
Q  33 acattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaagaca 132  Q
    |||||||||| ||| || ||| | || |||||||||||||||||||||||||| | |||||| ||||| ||| | ||||| || ||||| |||||||| |    
T  28504673 acattacatgccttaatggagcaaataggtaaagaaattgttcgacaagaatccctaaaagaacctggaaaatgtagtaggttgtggtttcataaagata 28504772  T
Q  133 tagtccaagttttagaagaaa 153  Q
    || | || || ||||||||||    
T  28504773 taattcatgtcttagaagaaa 28504793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 28787804 - 28787876
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    |||||| |||||||||||||||||| || |||||||||||| | || ||||||||||| || |||||||||||    
T  28787804 atgtgagattacatgacttgatagaagacatgggtaaagaagtcgtccgacaagaatcgcctaaagagcctgg 28787876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 28793925 - 28793997
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    |||||| |||||||||||||||||| || |||||||||||| | || ||||||||||| || |||||||||||    
T  28793925 atgtgagattacatgacttgatagaagacatgggtaaagaagtcgtccgacaagaatcgcctaaagagcctgg 28793997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 26804018 - 26804149
Alignment:
Q  37 tacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaagacatagt 136  Q
    |||||||||||||| |||| |||||||||||| | || |||||||||||||| ||||| ||||  ||||| ||||| ||||||   ||| |||| |||||    
T  26804018 tacatgacttgataaaggacatgggtaaagaagtcgtccgacaagaatcacctaaagatcctgaaaaacgaagtaggttatggcgtcatgaagatatagt 26804117  T
Q  137 ccaagttttagaagaaaatttggtgagtaaga 168  Q
     || ||| || |||||||  | ||||||||||    
T  26804118 tcatgttataaaagaaaacattgtgagtaaga 26804149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 29695023 - 29694932
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatgg 119  Q
    |||| ||||||||||| ||||||||||| ||||| |||||||||||| ||| |||||||||  |||| ||||| ||||| | ||| ||||||    
T  29695023 atgtaacattacatgatttgatagaggatatggggaaagaaattgttagacgagaatcacctgaagatcctggaaaacgcactaggttatgg 29694932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 25075432 - 25075502
Alignment:
Q  30 gtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    |||||||||||||||||| ||||||| |||||||||||||| || ||||| ||||||   |||||||||||    
T  25075432 gtgacattacatgacttgttagaggacatgggtaaagaaatcgtccgacatgaatcaattaaagagcctgg 25075502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 25581273 - 25581327
Alignment:
Q  31 tgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatc 85  Q
    |||| |||||||||||||||||||| |||||||||||||| || |||||||||||    
T  25581273 tgaccttacatgacttgatagaggacatgggtaaagaaatcgtccgacaagaatc 25581327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 26657525 - 26657643
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataa 127  Q
    ||||| ||||||| || ||||||||||| |||||||||||||| || ||||||||||||   |||||||| ||  |||| ||||| |||||||  || ||    
T  26657525 atgtggcattacacgatttgatagaggacatgggtaaagaaatcgtccgacaagaatcaagtaaagagcccggagaacgtagtaggttatggtgtcacaa 26657624  T
Q  128 agacatagtccaagtttta 146  Q
     |||||||| || ||||||    
T  26657625 tgacatagttcatgtttta 26657643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 26763496 - 26763614
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataa 127  Q
    ||||| ||||||| || ||||||||||| |||||||||||||| || ||||||||||||   |||||||| ||  |||| ||||| |||||||  || ||    
T  26763496 atgtggcattacacgatttgatagaggacatgggtaaagaaatcgtccgacaagaatcaagtaaagagcccggagaacgtagtaggttatggtgtcacaa 26763595  T
Q  128 agacatagtccaagtttta 146  Q
     |||||||| || ||||||    
T  26763596 tgacatagttcatgtttta 26763614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 26813102 - 26813160
Alignment:
Q  30 gtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcacc 88  Q
    |||||||||||||||||||||||| | | ||||||||||||||| | ||||||||||||    
T  26813102 gtgacattacatgacttgatagagcacacgggtaaagaaattgtccaacaagaatcacc 26813160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 27603324 - 27603254
Alignment:
Q  30 gtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    |||||| | ||| ||||||||||||| |||||||||||| | || |||||||||||||| |||||||||||    
T  27603324 gtgacactgcataacttgatagaggacatgggtaaagaagtcgtccgacaagaatcacctaaagagcctgg 27603254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 27609753 - 27609679
Alignment:
Q  26 ttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    ||||||||  |||||||||||||||||||| |||||||||||| | || ||||||||||||   |||||||||||    
T  27609753 ttatgtgatgttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctgg 27609679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 27717132 - 27717058
Alignment:
Q  26 ttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    ||||||||  |||||||||||||||||||| |||||||||||| | || ||||||||||||   |||||||||||    
T  27717132 ttatgtgatgttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctgg 27717058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 29476686 - 29476608
Alignment:
Q  44 cttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttc 122  Q
    ||||||||||   ||||||||||||||||||||  | ||||||||| |||| ||||||| ||| |||||||||||||||    
T  29476686 cttgatagagagcatgggtaaagaaattgttcgtgaggaatcaccagaagatcctgggagacgtagtagattatggttc 29476608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 25546531 - 25546588
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatc 85  Q
    ||||||| |||||||||||||||||||| |||||||||||| | || |||||||||||    
T  25546531 atgtgaccttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatc 25546588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 26057470 - 26057527
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatc 85  Q
    ||||||| |||||||||||||||||||| |||||||||||| | || |||||||||||    
T  26057470 atgtgaccttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatc 26057527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 26077440 - 26077497
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatc 85  Q
    ||||||| |||||||||||||||||||| |||||||||||| | || |||||||||||    
T  26077440 atgtgaccttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatc 26077497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 26951295 - 26951352
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatca 86  Q
    ||||||||||||||||||||||||||| ||||||| ||||||  | ||||||||||||    
T  26951295 tgtgacattacatgacttgatagaggatatgggtatagaaatcatccgacaagaatca 26951352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 26825374 - 26825445
Alignment:
Q  26 ttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcc 97  Q
    ||||||||||||||||||||||||| |||| ||||| |||||| | || |||||| ||||| | ||||||||    
T  26825374 ttatgtgacattacatgacttgataaaggacatgggcaaagaagtagtccgacaacaatcatctaaagagcc 26825445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 27663829 - 27663762
Alignment:
Q  33 acattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    ||||||||||||||||||||| | ||||||| |||||| || ||||||||||||   |||||||||||    
T  27663829 acattacatgacttgatagagtatatgggtatagaaatagtccgacaagaatcaattaaagagcctgg 27663762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 25491933 - 25491879
Alignment:
Q  33 acattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcac 87  Q
    ||||||||| ||||||||||| | |||||||||||| | ||||||||||||||||    
T  25491933 acattacataacttgatagagcacatgggtaaagaagtcgttcgacaagaatcac 25491879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 26648019 - 26648093
Alignment:
Q  26 ttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    |||| ||| |||||||||||||||| |||| |||||||| ||| | || |||||||||||||  |||||||||||    
T  26648019 ttatctgagattacatgacttgataaaggacatgggtaaggaagtagtccgacaagaatcacgtaaagagcctgg 26648093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 26753987 - 26754061
Alignment:
Q  26 ttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    |||| ||| |||||||||||||||| |||| |||||||| ||| | || |||||||||||||  |||||||||||    
T  26753987 ttatctgagattacatgacttgataaaggacatgggtaaggaagtagtccgacaagaatcacgtaaagagcctgg 26754061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 29523458 - 29523536
Alignment:
Q  43 acttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggtt 121  Q
    ||||||| ||| | |||| ||||||| ||||||| | ||||||||||| ||||||||||||| | |||||| |||||||    
T  29523458 acttgatcgagaaaatggctaaagaacttgttcgtcgagaatcaccaacagagcctgggaaatgtagtagactatggtt 29523536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 26978936 - 26978989
Alignment:
Q  33 acattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatca 86  Q
    ||||||||| ||||||||||||| ||||||| |||||| || ||||||||||||    
T  26978936 acattacattacttgatagaggatatgggtatagaaatcgtccgacaagaatca 26978989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 28490121 - 28490040
Alignment:
Q  31 tgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtag 112  Q
    |||||||||| || ||| ||||||| ||||| |||||||||||| ||||||| |||||| || | ||||| ||||| |||||    
T  28490121 tgacattacacgatttggtagaggatatggggaaagaaattgttagacaagagtcaccagaaaatcctggaaaacgcagtag 28490040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 29802531 - 29802450
Alignment:
Q  31 tgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtag 112  Q
    |||||||||| || ||| ||||||| ||||| |||||||||||| ||||||| |||||| || | ||||| ||||| |||||    
T  29802531 tgacattacacgatttggtagaggatatggggaaagaaattgttagacaagagtcaccagaaaatcctggaaaacgcagtag 29802450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 29727581 - 29727451
Alignment:
Q  34 cattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaagacat 133  Q
    |||||||||| ||| |||| || ||||| |||||||||||| ||||||| ||||||||  | || ||  |||| ||||| ||||||  || |||||| ||    
T  29727581 cattacatgatttgctagaagatatgggaaaagaaattgttagacaagagtcaccaaataatccgggagaacgcagtaggttatgggaccctaaagatat 29727482  T
Q  134 agtccaagttttagaagaaaatttggtgagt 164  Q
    |    |||||||||||||||||  |||||||    
T  29727481 acaaaaagttttagaagaaaataaggtgagt 29727451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 27426246 - 27426186
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcacc 88  Q
    ||||| |||||||| ||||||||||| | |||||||||||| | || |||| |||||||||    
T  27426246 atgtgtcattacataacttgatagagaacatgggtaaagaactcgtccgactagaatcacc 27426186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 29 - 155
Target Start/End: Original strand, 26137434 - 26137560
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaa 128  Q
    |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| || ||||| ||| ||    
T  26137434 tgtggcattacatgacttgatagaggatatgggtaaagaaattgtccgacaagaatcacccaaagaacctggaaaacgcagtaggttgtggtttcatgaa 26137533  T
Q  129 gacatagtccaagttttagaagaaaat 155  Q
    || ||||| || |||||| ||||||||    
T  26137534 gatatagttcatgttttaaaagaaaat 26137560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 155
Target Start/End: Complemental strand, 5922101 - 5921979
Alignment:
Q  33 acattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaagaca 132  Q
    |||||||||||  |||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||| || || ||||| ||||||| || | |||| |    
T  5922101 acattacatgatgtgatagaggacatgggaaaagaaattgttagacaagaatcaccgaaagagcctggaaagcgcagtaggttatggtgccctgaagata 5922002  T
Q  133 tagtccaagttttagaagaaaat 155  Q
    |||| ||||||||||||||||||    
T  5922001 tagttcaagttttagaagaaaat 5921979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 266980 - 266888
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggt 120  Q
    ||||||||||||||||| |||||||||| |||||||||||| | || || ||||||||||| |||||||||||  |||| ||||| |||||||    
T  266980 atgtgacattacatgacatgatagaggacatgggtaaagaagtggtccgccaagaatcacctaaagagcctggagaacgaagtaggttatggt 266888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 28126316 - 28126243
Alignment:
Q  27 tatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    ||||||||||||||||||||||||||||| | |||||||||||| || ||  |||||||||  |||||||||||    
T  28126316 tatgtgacattacatgacttgatagaggatacgggtaaagaaatcgtccggaaagaatcacgtaaagagcctgg 28126243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 166
Target Start/End: Original strand, 16692410 - 16692550
Alignment:
Q  26 ttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccat 125  Q
    |||||||||||| ||| ||||||| ||||| ||||||||||||||||| ||| ||||||| |||||| | ||||| ||||| ||||| || ||||| ||     
T  16692410 ttatgtgacattgcatcacttgattgaggacatgggtaaagaaattgtccgaaaagaatccccaaaacatcctggtaaacgcagtaggttgtggtttcac 16692509  T
Q  126 aaagacatagtccaagttttagaagaaaatttggtgagtaa 166  Q
     |||| ||||| |||||||||||||||||| ||||||||||    
T  16692510 gaagatatagttcaagttttagaagaaaatatggtgagtaa 16692550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 17991832 - 17991704
Alignment:
Q  27 tatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccata 126  Q
    ||||| ||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||  ||||||||||||| ||||   |||    
T  17991832 tatgttacagtacatgacttgatagaggacatgggtaaagaaatcgttcggcaagaatcacctaaagagcctggagaacggagtagattgtggtgttata 17991733  T
Q  127 aagacatagtccaagttttagaagaaaat 155  Q
    | |||||||| || |||||| | ||||||    
T  17991732 atgacatagttcatgttttacaggaaaat 17991704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 3281218 - 3281309
Alignment:
Q  39 catgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaaga 130  Q
    |||||||||||||| || |||||||||||||||||  |||| ||||||  || ||||||||| ||||| || || || ||||||||| ||||    
T  3281218 catgacttgatagaagacatgggtaaagaaattgtaagacaggaatcagtaagagagcctggaaaacgtagcaggttgtggttccatgaaga 3281309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 56921 - 56795
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaa 128  Q
    |||||| ||||||| |||||||||| | ||||||||||||||||| ||  |||| || |||||||||||||| | ||| ||||| |||||||||||||||    
T  56921 tgtgacgttacatgccttgatagagaaaatgggtaaagaaattgtccgcaaagagtctccaaaagagcctggaagacgtagtaggttatggttccataaa 56822  T
Q  129 gacatagtccaagttttagaagaaaat 155  Q
    || ||| |  | || ||||||||||||    
T  56821 gatataatttatgtcttagaagaaaat 56795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 12590286 - 12590413
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataa 127  Q
    |||||||||||||||| ||| ||||||| ||||| |||||||| ||| |||||||||||||  || | ||||| ||||| ||||| ||||||| |  |||    
T  12590286 atgtgacattacatgatttggtagaggatatggggaaagaaatagttagacaagaatcaccggaaaatcctggaaaacgtagtaggttatggtcctctaa 12590385  T
Q  128 agacatagtccaagttttagaagaaaat 155  Q
    |||  || | ||||||||||||||||||    
T  12590386 agatttaattcaagttttagaagaaaat 12590413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 16371764 - 16371627
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaa 128  Q
    ||||||||||||| || || |||| || ||||||||||||||||| ||||||||||||||||| ||||| ||  |||| ||||| ||||||||    ||     
T  16371764 tgtgacattacataacctggtagaagacatgggtaaagaaattgtccgacaagaatcaccaaaggagccaggcgaacgtagtaggttatggtttgtcaat 16371665  T
Q  129 gacatagtccaagttttagaagaaaatttggtgagtaa 166  Q
    ||  |||| |||||||||||||| |||| ||| |||||    
T  16371664 gatgtagttcaagttttagaagacaattcggtaagtaa 16371627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 16441599 - 16441689
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatgg 119  Q
    ||||||||||||| ||||||||   || ||||| | ||||||||||||||| ||||||||||| |||||||| ||||| ||||| ||||||    
T  16441599 tgtgacattacataacttgatacgagacatgggcagagaaattgttcgacaggaatcaccaaatgagcctggcaaacgtagtaggttatgg 16441689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 35984859 - 35984973
Alignment:
Q  37 tacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaagacatagt 136  Q
    |||||| |||||||||||| |||||||| |||||||||||||  ||||||||| |||| ||||| || || ||| | |||||||  ||| |||| ||| |    
T  35984859 tacatgccttgatagaggacatgggtaaggaaattgttcgactggaatcaccagaagaacctggaaagcgtagtcggttatggtctcatgaagatataat 35984958  T
Q  137 ccaagttttagaaga 151  Q
     ||||||||||||||    
T  35984959 tcaagttttagaaga 35984973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 31906614 - 31906742
Alignment:
Q  37 tacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaagacatagt 136  Q
    ||||||||||||| | ||| |||| ||||||||||||| ||   ||||||||| | || ||||| ||||| ||| |||||||||| ||  |||| ||| |    
T  31906614 tacatgacttgattggggacatggctaaagaaattgttagattggaatcaccagacgaacctggaaaacgtagtcgattatggtttcacgaagatataat 31906713  T
Q  137 ccaagttttagaagaaaatttggtgagta 165  Q
     |||||||||||||| ||||  |||||||    
T  31906714 tcaagttttagaagacaattcagtgagta 31906742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 155
Target Start/End: Original strand, 16450445 - 16450567
Alignment:
Q  33 acattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaagaca 132  Q
    |||||||||||| ||||| |  | ||||| | ||||||||| ||||  ||||||||| | |||||||| ||||| ||||| ||||||||   | ||||      
T  16450445 acattacatgacctgatacaaaaaatgggcagagaaattgtccgacttgaatcaccacatgagcctggcaaacgtagtaggttatggttttgtgaagatg 16450544  T
Q  133 tagtccaagttttagaagaaaat 155  Q
    |||||||||||||| | ||||||    
T  16450545 tagtccaagttttaaatgaaaat 16450567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 7641 - 7506
Alignment:
Q  31 tgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaaga 130  Q
    |||||||||||||  ||||||| || ||||| |||||||||||  ||| |||||||||| |  |||||||  |||| |||||||||||||    ||||||    
T  7641 tgacattacatgatctgatagaagatatgggaaaagaaattgtcagactagaatcaccagatcagcctggagaacgcagtagattatggtctgctaaaga 7542  T
Q  131 catagtccaagttttagaagaaaatttggtgagtaa 166  Q
    |||||   |||||||||||||||||  |||||||||    
T  7541 catagctgaagttttagaagaaaatacggtgagtaa 7506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 615341 - 615468
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataa 127  Q
    |||||||||||||||| ||| ||||||| ||||| |||||||||||| |||||||||||||  |||| || ||||| || ||| | |||||||    |||    
T  615341 atgtgacattacatgatttggtagaggatatggggaaagaaattgttagacaagaatcacccgaagatcccgggaagcgaagtcggttatggtcttctaa 615440  T
Q  128 agacatagtccaagttttagaagaaaat 155  Q
    ||| ||| | ||||||||| ||||||||    
T  615441 agatataattcaagttttacaagaaaat 615468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 332 - 401
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcc 97  Q
    ||||||||||||||||||| |||||||| |||||||||||| | || ||||||||||| || ||||||||    
T  332 atgtgacattacatgactttatagaggacatgggtaaagaagtcgtacgacaagaatcgcctaaagagcc 401  T

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Target: scaffold0419 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 9050 - 9119
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcc 97  Q
    ||||||||||||||||||| |||||||| |||||||||||| | || ||||||||||| || ||||||||    
T  9050 atgtgacattacatgactttatagaggacatgggtaaagaagtcgtacgacaagaatcgcctaaagagcc 9119  T

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Target: scaffold0277 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 3331 - 3242
Alignment:
Q  31 tgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggt 120  Q
    ||||| |||||||||||||| |||| |||||||||||| | || ||||||||||| || |||||||||||  || | |||||||||||||    
T  3331 tgacactacatgacttgataaaggacatgggtaaagaagtcgtccgacaagaatcgcccaaagagcctggagaaagaagtagattatggt 3242  T

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Target: scaffold0277; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 12294 - 12205
Alignment:
Q  31 tgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggt 120  Q
    ||||| |||||||||||||| |||| |||||||||||| | || ||||||||||| || |||||||||||  || | |||||||||||||    
T  12294 tgacactacatgacttgataaaggacatgggtaaagaagtcgtccgacaagaatcgcccaaagagcctggagaaagaagtagattatggt 12205  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 18688248 - 18688179
Alignment:
Q  30 gtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctg 99  Q
    |||||||||||||||||| ||||||  ||||||||||||||||| ||  |||||||||| ||||||||||    
T  18688248 gtgacattacatgacttgctagaggtcatgggtaaagaaattgtccggaaagaatcacctaaagagcctg 18688179  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 18730131 - 18730060
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctg 99  Q
    |||||||||||||||||||| ||||||  |||||||||||||| || ||  |||||||||| ||||||||||    
T  18730131 atgtgacattacatgacttgctagaggtcatgggtaaagaaatcgtccggaaagaatcacccaaagagcctg 18730060  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 18678191 - 18678122
Alignment:
Q  30 gtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctg 99  Q
    |||||||||||||||||| ||||||  |||||||||||||| || ||  |||||||||| ||||||||||    
T  18678191 gtgacattacatgacttgctagaggtcatgggtaaagaaatcgtccggaaagaatcacccaaagagcctg 18678122  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 18698034 - 18697965
Alignment:
Q  30 gtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctg 99  Q
    |||||||||||||||||| ||||||  |||||||||||||| || ||  |||||||||| ||||||||||    
T  18698034 gtgacattacatgacttgctagaggccatgggtaaagaaatcgtccggaaagaatcacccaaagagcctg 18697965  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 18722704 - 18722635
Alignment:
Q  30 gtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctg 99  Q
    |||||||||||||||||| ||||||  ||||||||||||||  ||||  |||||||||| ||||||||||    
T  18722704 gtgacattacatgacttgctagaggtcatgggtaaagaaatcattcgtaaagaatcacctaaagagcctg 18722635  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 18654111 - 18654042
Alignment:
Q  30 gtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctg 99  Q
    |||||||||||||||||| ||||||  |||||||||||||| || ||  |||||||||| ||| ||||||    
T  18654111 gtgacattacatgacttgctagaggtcatgggtaaagaaatcgtccggaaagaatcacctaaacagcctg 18654042  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 5089589 - 5089533
Alignment:
Q  29 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatc 85  Q
    |||||||||||||||| |||||||    ||||||||||||||||||||| |||||||    
T  5089589 tgtgacattacatgacctgatagaaatcatgggtaaagaaattgttcgaaaagaatc 5089533  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 18075309 - 18075369
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcacc 88  Q
    ||||| |||||||| ||||||||||| | |||||||||||| | || |||| |||||||||    
T  18075309 atgtgtcattacataacttgatagagaacatgggtaaagaactcgtccgactagaatcacc 18075369  T

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Target: scaffold0012 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 211758 - 211631
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataa 127  Q
    |||||||| | ||||| ||| |||| || ||||| |||||||||||| |||||||||||||  || | ||||| ||||| |||||||||||||||  | |    
T  211758 atgtgacaatgcatgatttggtagaagatatggggaaagaaattgttagacaagaatcacctgaaaatcctggaaaacgcagtagattatggttctctga 211659  T
Q  128 agacatagtccaagttttagaagaaaat 155  Q
    ||| ||| | || |||||||| ||||||    
T  211658 agatataatgcacgttttagaggaaaat 211631  T

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Target: scaffold0012; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 166
Target Start/End: Complemental strand, 238502 - 238363
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaaga-aattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccata 126  Q
    |||||| ||||||||| ||| ||||||| ||||| ||||  ||||||| ||| ||| ||||| ||| | | ||| ||||| ||||| ||||||| |  ||    
T  238502 atgtgagattacatgatttggtagaggatatggggaaagtgaattgttagacgagattcacctaaaaatcttggaaaacgcagtaggttatggtcctcta 238403  T
Q  127 aagacatagtccaagttttagaagaaaatttggtgagtaa 166  Q
    |||| ||| | ||||||||||||||||||  |||||||||    
T  238402 aagatataattcaagttttagaagaaaatacggtgagtaa 238363  T

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Target: scaffold0007 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 67865 - 67996
Alignment:
Q  35 attacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaagacata 134  Q
    |||||||||  ||||||| || ||||| |||||||||||  ||| |||||||||| |  |||||||  |||| |||||||||||||    ||||||||||    
T  67865 attacatgatctgatagaagacatgggaaaagaaattgtcagactagaatcaccatatcagcctggagaacgcagtagattatggtcatctaaagacata 67964  T
Q  135 gtccaagttttagaagaaaatttggtgagtaa 166  Q
    ||  |||||||||| ||||||  |||||||||    
T  67965 gttgaagttttagaggaaaatacggtgagtaa 67996  T

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Target: scaffold0007; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 32519 - 32649
Alignment:
Q  36 ttacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaagacatag 135  Q
    ||||||||  ||||||| || ||||| |||||||||||  ||| |||||||||| |  |||||||  |||| |||||||||||||    |||||||||||    
T  32519 ttacatgatctgatagaagatatgggaaaagaaattgtcagactagaatcaccatatcagcctggagaacgcagtagattatggtctgttaaagacatag 32618  T
Q  136 tccaagttttagaagaaaatttggtgagtaa 166  Q
    |  ||||||| || ||||||  |||||||||    
T  32619 ttgaagttttggaggaaaatacggtgagtaa 32649  T

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Target: scaffold0007; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 37268 - 37398
Alignment:
Q  36 ttacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaagacatag 135  Q
    ||||||||  ||||||| || ||||| |||||||||||  ||| |||||||||| |  |||||||  |||| |||||||||||||    |||||||||||    
T  37268 ttacatgatctgatagaagatatgggaaaagaaattgtcagactagaatcaccatatcagcctggagaacgcagtagattatggtctgttaaagacatag 37367  T
Q  136 tccaagttttagaagaaaatttggtgagtaa 166  Q
    |  ||||||| || ||||||  |||||||||    
T  37368 ttgaagttttggaggaaaatacggtgagtaa 37398  T

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Target: scaffold0349 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 2172 - 2098
Alignment:
Q  26 ttatgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 100  Q
    ||||||||  |||||||||||||||||||| |||||||||||| | || ||||||||||||   |||||||||||    
T  2172 ttatgtgatgttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctgg 2098  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 61117 - 61177
Alignment:
Q  28 atgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcacc 88  Q
    ||||| |||||||| ||||||||||| | |||||||||||| | || |||| |||||||||    
T  61117 atgtgtcattacataacttgatagagaacatgggtaaagaactcgtccgactagaatcacc 61177  T

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