View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9013_high_1 (Length: 552)
Name: NF9013_high_1
Description: NF9013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9013_high_1 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 11 - 552
Target Start/End: Complemental strand, 28081669 - 28081128
Alignment:
| Q |
11 |
catcaccaattttggaagaaagaagagacaaaagctgttcttgtgtgtaaaatctacttcccatgttaacagaagcttgttgaatcatcaaatcattcac |
110 |
Q |
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| T |
28081669 |
catcaccaattttggaagaaagaagagacaaaagctgttcttgtgtgtaaaatctacttcccatgttaacagaagcttgttgaatcatcaaatcattcac |
28081570 |
T |
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| Q |
111 |
aacagacacactggcatgattcacatcaaggtctaattctttcaacgccgccatcaacttcgccgcagggtgattcttcttgctacattgaatcctaatc |
210 |
Q |
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| T |
28081569 |
aacagacacactagcatgattcacatcaaggtctaattctttcaacgccgccatcaacttcgccgcagggtgattcttcttgctgcattgaatcctaatc |
28081470 |
T |
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| Q |
211 |
atagcatcccaacccataatcttcacatcaatatccaagtcaattaacttagaagggcttgttgagctcgttgttttctccatttctttatctaatggaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
28081469 |
atagcatcccaacccataatcttcacatcaatatccaagtcaattaacttagaagagcttgttgagcttgttgttttctccttttctttatctaatggaa |
28081370 |
T |
|
| Q |
311 |
ttggattttgactttgatttttgcttgcaacaagttctaattccttctttgttgcacctaattgtatctccaattcgcctttcgacgattccagcccttg |
410 |
Q |
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| T |
28081369 |
ttggattttgactttgatttttgcttgcaacaagttctaattccttctttgttgcacctaattgtttctccaattcaccttttgacgattccagcccttg |
28081270 |
T |
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| Q |
411 |
tagcttcgatttcaattcatttatataagaaatagcatcgcctaggagcgatgctttgtccattttagaaacatttggaaccacagcacgtagagcatag |
510 |
Q |
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| T |
28081269 |
tagcttcgatttcaattcgtttatataagatatagcatcgcctagcagcgatgctttgtccatcttagaaacatttggaaccacagcacgtagagcatag |
28081170 |
T |
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| Q |
511 |
aatttctggttaagcttttctcttctttgtctctctgcttct |
552 |
Q |
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| T |
28081169 |
aatttttggttaagcttttctcttctttgtctctctgcttct |
28081128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 551
Target Start/End: Complemental strand, 9194878 - 9194790
Alignment:
| Q |
463 |
gctttgtccattttagaaacatttggaaccacagcacgtagagcatagaatttctggttaagcttttctcttctttgtctctctgcttc |
551 |
Q |
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| T |
9194878 |
gctttatccatctttgaaacgtttggaaccacagatcttaaagcatagaatctatggtttagtttctctctcctttgtctctctgcttc |
9194790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 551
Target Start/End: Original strand, 9213152 - 9213240
Alignment:
| Q |
463 |
gctttgtccattttagaaacatttggaaccacagcacgtagagcatagaatttctggttaagcttttctcttctttgtctctctgcttc |
551 |
Q |
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| T |
9213152 |
gctttatccatctttgaaacatttggaaccacagatcttaaagcgtaaaatctatggtttagtttctctctcctttgtctctctgcttc |
9213240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 85 - 245
Target Start/End: Complemental strand, 12886381 - 12886221
Alignment:
| Q |
85 |
gcttgttgaatcatcaaatcattcacaacagacacactggcatgattcacatcaaggtctaattctttcaacgccgccatcaacttcgccgcagggtgat |
184 |
Q |
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|||||||| |||||||||||||| || ||||||||||||||||| | ||| || ||||| | || | ||||| ||||| ||| |||| |||||||| | |
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| T |
12886381 |
gcttgttgtatcatcaaatcatttaccacagacacactggcatggtgcacttctaggtcaagctccattaacgctgccattaacctcgctgcagggtggt |
12886282 |
T |
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| Q |
185 |
tcttcttgctacattgaatcctaatcatagcatcccaacccataatcttcacatcaatatc |
245 |
Q |
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| T |
12886281 |
ttttcttactgcattggacccttatcattgcatcccaacctataatcttcacgtcgatatc |
12886221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 551
Target Start/End: Complemental strand, 12886003 - 12885915
Alignment:
| Q |
463 |
gctttgtccattttagaaacatttggaaccacagcacgtagagcatagaatttctggttaagcttttctcttctttgtctctctgcttc |
551 |
Q |
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||||||||||| || |||||||| ||||| || || || || ||||||||| |||| || ||||| ||||||||||| ||||| ||||| |
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| T |
12886003 |
gctttgtccatctttgaaacattaggaacaaccgctcgaagtgcatagaatctctgattcagcttctctcttctttgcctctcagcttc |
12885915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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