View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9013_low_2 (Length: 669)
Name: NF9013_low_2
Description: NF9013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9013_low_2 |
 | |
|
| [»] scaffold0197 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 7 - 653
Target Start/End: Original strand, 12530964 - 12531614
Alignment:
| Q |
7 |
ttcgtgtttggaattagctatccgcgtgcccttcgttccagagaacaacagccgtcgataaaccctctcatctacggtcacaatcttcccttttcatcat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12530964 |
ttcgtgtttggaattagctatccgcgtgcccttcgttccagagaacaacagccgtcgataaaccctctcatctacggtcacaatcttcccttttcatcat |
12531063 |
T |
|
| Q |
107 |
cccaaatcccaaattttcacaattcccgcttattttcacctcctaaaatttcaatcttccctttataaattacaccaaacactttcctctctcaacgcaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
12531064 |
cccaaatcccaaattttcacaattcccgcttattttcacctcccaaaatttcaatctttcctttataaattacaccaaacacttatctttctcaacgcaa |
12531163 |
T |
|
| Q |
207 |
attcaaattgaaatcaaaacaaacaaac----cttaatttctctttctctctctaatttcaatcctcaattcgccatggctcgtaccaagcaaacagctc |
302 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12531164 |
attcaaattgaaatcaacacaaacaaacagaccctaatttctctttctctctctaatttcaattatcaattcgccatggctcgtaccaagcaaacagctc |
12531263 |
T |
|
| Q |
303 |
gcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccggaggagtcaagaagccacacagatt |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12531264 |
gcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccggaggagtcaagaagccacacagatt |
12531363 |
T |
|
| Q |
403 |
ccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatc |
502 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12531364 |
ccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgtgaaatc |
12531463 |
T |
|
| Q |
503 |
gctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatacta |
602 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12531464 |
gctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacta |
12531563 |
T |
|
| Q |
603 |
atctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12531564 |
atctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
12531614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 13 - 653
Target Start/End: Complemental strand, 12547649 - 12547005
Alignment:
| Q |
13 |
tttggaattagctatccgcgtgcccttcgttccagagaacaacagccgtcgataaaccctctcatctacggtcacaatcttcccttttcatcatcccaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12547649 |
tttggaattagctatccgcgtgcccttcgttccagagaacaacagccgtcgataaaccctctcatctacggtcacaatcttcccttttcatcatcccaaa |
12547550 |
T |
|
| Q |
113 |
tcccaaattttcacaattcccgcttattttcacctcctaaaatttcaatcttccctttataaattacaccaaacactttcctctctcaacgcaaattcaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
12547549 |
tcccaaattttcacaattcccgcttattttcacctcccaaaatttcaatctttcctttataaattacaccaaacacttatctttctcaacgcaaattcaa |
12547450 |
T |
|
| Q |
213 |
attgaaatcaa----aacaaacaaaccttaatttctctttctctctctaatttcaatcctcaattcgccatggctcgtaccaagcaaacagctcgcaaat |
308 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12547449 |
attgaaatcaacacaaacaaacaaaccctaatttctctttctctctctaatttcaattatcaattcgccatggctcgtaccaagcaaacagctcgcaaat |
12547350 |
T |
|
| Q |
309 |
ccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccggaggagtcaagaagccacacagattccgtcc |
408 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12547349 |
ccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccggaggagtcaagaagccacacagattccgtcc |
12547250 |
T |
|
| Q |
409 |
tggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcag |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12547249 |
aggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgtgaaatcgctcaa |
12547150 |
T |
|
| Q |
509 |
gatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctct |
608 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12547149 |
gatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatactaatctct |
12547050 |
T |
|
| Q |
609 |
gtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12547049 |
gtgccattcatgctaagagggttactatcatgcctaaggatattc |
12547005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 285 - 648
Target Start/End: Complemental strand, 9867032 - 9866668
Alignment:
| Q |
285 |
gtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccggaggagt |
384 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| ||||||||| | || |||| ||||| |||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
9867032 |
gtaccaaacaaacggctcgcaaatccaccggcggtaaagcaccatgaaagaagctggccacaaaagctgctcggaaatcagctccggcaacgggaggagt |
9866933 |
T |
|
| Q |
385 |
caagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgca--agtatcagaagagtaccgagcttctgataaggaagcttccattcc |
482 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||| |||||||||||||| | |||| || ||||| | |||||||| ||||||||||||| || | |
|
|
| T |
9866932 |
gaagaagccacaccgtttccgtcctggaaccgttgcgcttcgtgagatccgtaagagtaccaaaagagcattgagcttct--taaggaagcttccgtttc |
9866835 |
T |
|
| Q |
483 |
agagact--tgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatctt |
580 |
Q |
| |
|
||||||| | | | |||| ||| |||||||||| || ||||| | ||| | || |||| ||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
9866834 |
agagactgatctgagggaaa-cgcgaaggatttcaagactgatctgaggttctagagtagtgatgtttctgctcttcaagaagctgctaaagactatctt |
9866736 |
T |
|
| Q |
581 |
gttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaagga |
648 |
Q |
| |
|
|||||||||||||| |||||||| || ||||| |||||||||||||| |||||||| |||||| |||| |
|
|
| T |
9866735 |
gttggtttgtttgaagatactaacctttgtgctattcatgctaagagagttactattatgcctgagga |
9866668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 276 - 636
Target Start/End: Original strand, 9894397 - 9894748
Alignment:
| Q |
276 |
ccatggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaac |
375 |
Q |
| |
|
||||||| |||||||||||||||| ||||| || ||||| ||||||||| | || ||||||||||||||||| || || ||||| |||| |||| | |
|
|
| T |
9894397 |
ccatggcaggtaccaagcaaacagcacgcaat---actggcggcaaagcaccacgaaagcagcttgccaccaaagccgctcgaaaatcagctctggcagc |
9894493 |
T |
|
| Q |
376 |
cggaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagctt |
475 |
Q |
| |
|
|||| ||| |||||||||||| || ||| |||||| ||||| |||||||||||||| || || |||| ||| || |||| |||||||||||| |
|
|
| T |
9894494 |
cggaacagtgaagaagccacaccatttttgtcatggaacggttgctcttcgtgagatccgtaattaccagaggagcac-----ttctaataaggaagctt |
9894588 |
T |
|
| Q |
476 |
ccattccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagctt |
575 |
Q |
| |
|
|| || ||||||||||| | ||||| |||||||||| ||| || | ||| | ||||| || ||||||||||||||| ||||||||| || |||||||| |
|
|
| T |
9894589 |
ccgtttcagagacttgtgagggaaattgctcaggatt-caagactggtctgaggttccagagtagtgctgtttctgctgttcaagaagttgttgaagctt |
9894687 |
T |
|
| Q |
576 |
atcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactat |
636 |
Q |
| |
|
| ||||| |||||||||| ||||||||| | || || |||||||||||| | |||||||| |
|
|
| T |
9894688 |
gttttgttagtttgtttgaagatactaatatttgcgctattcatgctaagtgagttactat |
9894748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 544 - 652
Target Start/End: Original strand, 9869994 - 9870102
Alignment:
| Q |
544 |
tgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcct |
643 |
Q |
| |
|
||||| || |||||||||||||| |||||||||| |||||||||||||| | |||| |||||| || || |||||||||||||| |||||||| |||||| |
|
|
| T |
9869994 |
tgtttatggtcttcaagaagctgttgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcct |
9870093 |
T |
|
| Q |
644 |
aaggatatt |
652 |
Q |
| |
|
||||||||| |
|
|
| T |
9870094 |
aaggatatt |
9870102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 359 - 492
Target Start/End: Original strand, 9869843 - 9869976
Alignment:
| Q |
359 |
aaatctgctccggcaaccggaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagc |
458 |
Q |
| |
|
||||| |||| ||||||||| | ||| ||||| |||||| | ||| ||| |||||| ||||| |||||||||||||| ||||| |||||||| || |||| |
|
|
| T |
9869843 |
aaatcagctctggcaaccggggcagtgaagaaaccacactgtttctgtcatggaaccgttgctcttcgtgagatccgtaagtaccagaagagcactgagc |
9869942 |
T |
|
| Q |
459 |
ttctgataaggaagcttccattccagagacttgt |
492 |
Q |
| |
|
|||| |||||||||||||| || |||||||||| |
|
|
| T |
9869943 |
ttctaataaggaagcttccgttttagagacttgt |
9869976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 515 - 633
Target Start/End: Original strand, 38735501 - 38735619
Alignment:
| Q |
515 |
aaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgcca |
614 |
Q |
| |
|
||||||||||| | ||||| |||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||| || ||| | | |
|
|
| T |
38735501 |
aaaacagatctcaggttccatagcaacgctgtttctgctcttcaaaaagtcattgaagtttatcttgttggtttgtttgaagatactaacctttgtacta |
38735600 |
T |
|
| Q |
615 |
ttcatgctaagagggttac |
633 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38735601 |
ttcatgctaagagggttac |
38735619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 645
Target Start/End: Original strand, 12538673 - 12538712
Alignment:
| Q |
606 |
tctgtgccattcatgctaagagggttactatcatgcctaa |
645 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
12538673 |
tctgtgctattcatgctaagagagttactatcatgcctaa |
12538712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 278 - 653
Target Start/End: Complemental strand, 43480055 - 43479680
Alignment:
| Q |
278 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg |
377 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| || ||||| ||||||||||| || ||||||||||| || |||||||| |||||||| |||| |
|
|
| T |
43480055 |
atggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccgctcggaaatcagctccggccaccg |
43479956 |
T |
|
| Q |
378 |
gaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttcc |
477 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
43479955 |
gaggagtgaagaagccacacagattccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttcc |
43479856 |
T |
|
| Q |
478 |
attccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
577 |
Q |
| |
|
|||||| ||| | ||| | ||||||||||||||||||||||| ||||| | ||||| || || ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43479855 |
attccaaagattggttagggaaatcgctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagcttat |
43479756 |
T |
|
| Q |
578 |
cttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
||||||||||||||||| |||||||| || || || |||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
43479755 |
cttgttggtttgtttgaagatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattc |
43479680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 278 - 653
Target Start/End: Original strand, 25865447 - 25865822
Alignment:
| Q |
278 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg |
377 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| || ||||||||||| || || || ||||||||||| ||||||||||||| | |||| |
|
|
| T |
25865447 |
atggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctccaaccaccg |
25865546 |
T |
|
| Q |
378 |
gaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttcc |
477 |
Q |
| |
|
| ||||| |||||||| || | | ||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||| |||| | |||||||| |
|
|
| T |
25865547 |
gcggagtgaagaagcctcatcgttatcgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgtaagcttcc |
25865646 |
T |
|
| Q |
478 |
attccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
577 |
Q |
| |
|
||||||| | |||||||||||||| ||||||||||||||||| ||||| |||| || || ||||||| ||| ||||| ||||||||||| |||||| |
|
|
| T |
25865647 |
attccagcgtcttgttcgtgaaattgctcaggatttcaaaacggatctgagatttcagagtcatgctgttcttgcacttcaggaagctgctgaggcttat |
25865746 |
T |
|
| Q |
578 |
cttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
||||| || |||||||||||||||||| | ||||| ||||||||||||||||| || || ||||| |||||||||| |
|
|
| T |
25865747 |
cttgtgggattgtttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattc |
25865822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 278 - 653
Target Start/End: Original strand, 38799242 - 38799617
Alignment:
| Q |
278 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg |
377 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || || || |||| ||||| |||||||| || || |||||||| |||||||| |||| |
|
|
| T |
38799242 |
atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg |
38799341 |
T |
|
| Q |
378 |
gaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttcc |
477 |
Q |
| |
|
||||||| ||||||||||| |||||| | |||||||||||||| | | |||||||| |||||||||||||| || |||||||| || | || ||||| |
|
|
| T |
38799342 |
gaggagtgaagaagccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttcc |
38799441 |
T |
|
| Q |
478 |
attccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
577 |
Q |
| |
|
|||||| | |||||||||||||| ||||| |||||||| |||||||| ||||||| ||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
38799442 |
attccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttac |
38799541 |
T |
|
| Q |
578 |
cttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
| |||||| | ||||| || || || || ||||| |||||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
38799542 |
ttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattc |
38799617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 278 - 653
Target Start/End: Complemental strand, 38822275 - 38821900
Alignment:
| Q |
278 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg |
377 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || || || |||| ||||| |||||||| || || |||||||| |||||||| |||| |
|
|
| T |
38822275 |
atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg |
38822176 |
T |
|
| Q |
378 |
gaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttcc |
477 |
Q |
| |
|
||||||| ||||||||||| |||||| | |||||||||||||| | | |||||||| |||||||||||||| || |||||||| || | || ||||| |
|
|
| T |
38822175 |
gaggagtgaagaagccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttcc |
38822076 |
T |
|
| Q |
478 |
attccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
577 |
Q |
| |
|
|||||| | |||||||||||||| ||||| |||||||| |||||||| ||||||| ||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
38822075 |
attccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttac |
38821976 |
T |
|
| Q |
578 |
cttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
| |||||| | ||||| || || || || ||||| |||||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
38821975 |
ttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattc |
38821900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 278 - 653
Target Start/End: Original strand, 26591915 - 26592290
Alignment:
| Q |
278 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg |
377 |
Q |
| |
|
||||| ||||| |||||||| || ||||| ||||||||||| |||||||||||||| ||||| || || ||||| || |||||||| |||||||| |||| |
|
|
| T |
26591915 |
atggcacgtactaagcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaacaaaagccgctcggaaatccgctccggcgaccg |
26592014 |
T |
|
| Q |
378 |
gaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttcc |
477 |
Q |
| |
|
| ||||| |||||||||||| | ||| | || ||||| || ||||| ||||||||||||||||| |||||||| ||||| ||||| || | || ||||| |
|
|
| T |
26592015 |
gcggagtgaagaagccacaccgtttcaggccaggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttcc |
26592114 |
T |
|
| Q |
478 |
attccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
577 |
Q |
| |
|
|||||| | ||||||||||| || |||||||||||||| || ||||| || || || ||| |||||| || || || |||||||| || || |||||| |
|
|
| T |
26592115 |
tttccagcgtcttgttcgtgagattgctcaggatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttat |
26592214 |
T |
|
| Q |
578 |
cttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| || |||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
26592215 |
cttgttggattgtttgaggatactaacctctgcgctattcatgctaagcgtgttactatcatgcctaaggatattc |
26592290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 278 - 653
Target Start/End: Original strand, 41943691 - 41944066
Alignment:
| Q |
278 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg |
377 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| || || || |||||||| || || |||||||| ||||| || ||||||||||| |||||| |
|
|
| T |
41943691 |
atggctcgtactaagcaaactgctcgcaaatccaccggtggcaaggctccaaggaagcaactggccaccaaggctgctcgcaaatctgctcctacaaccg |
41943790 |
T |
|
| Q |
378 |
gaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttcc |
477 |
Q |
| |
|
| ||||||||||| || || | | |||||||| || |||||||||||||||||||| || || ||||||||||| || ||| |||| | |||||||| |
|
|
| T |
41943791 |
gtggagtcaagaaacctcatcgctatcgtcctggtaccgttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgatccgtaagcttcc |
41943890 |
T |
|
| Q |
478 |
attccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
577 |
Q |
| |
|
|||||| | |||||||||||||| ||||| |||||||| || ||||| ||||||| ||| ||||||| ||| ||||| ||||| || ||||||||| |
|
|
| T |
41943891 |
attccaacgtcttgttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagcttat |
41943990 |
T |
|
| Q |
578 |
cttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
|| ||||| |||||||||||||| ||| | ||||| |||||||||||||||||||| || ||||| ||||| |||| |
|
|
| T |
41943991 |
ctggttggattgtttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattc |
41944066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 554 - 653
Target Start/End: Original strand, 44343978 - 44344077
Alignment:
| Q |
554 |
cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
||||| ||||| ||||| |||||||| || || |||||||||||||| ||| | ||||| ||||||||||||||||| || || ||||| |||||||||| |
|
|
| T |
44343978 |
cttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattc |
44344077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 581 - 653
Target Start/End: Original strand, 38807046 - 38807118
Alignment:
| Q |
581 |
gttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
|||||| | |||||||| || |||| || || |||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
38807046 |
gttggtctctttgaggacacaaatccgtgcgcaattcatgctaagagagttactatcatgcctaaggacattc |
38807118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 486
Target Start/End: Original strand, 44343874 - 44343958
Alignment:
| Q |
404 |
cgtcctggaactgttgcacttcgtgaga--tccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagag |
486 |
Q |
| |
|
||||||||||| ||||| |||||||||| || | |||||||||||||||||| | ||| |||| | |||||||| |||||||| |
|
|
| T |
44343874 |
cgtcctggaaccgttgctcttcgtgagagatctgtaagtatcagaagagtaccaaacttttgatccgtaagcttcccttccagag |
44343958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 278 - 653
Target Start/End: Original strand, 13576095 - 13576470
Alignment:
| Q |
278 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg |
377 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||||||||||||||||| | ||||| || ||||| ||||| || |||||||| |||||||| |||| |
|
|
| T |
13576095 |
atggcacgtaccaaacaaacagcccgcaaatccaccggcggaaaagcaccacgcaaacaactcgccacaaaagccgctcggaaatccgctccggccaccg |
13576194 |
T |
|
| Q |
378 |
gaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttcc |
477 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||| || || |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
13576195 |
gaggagtgaagaagccacatcgtttccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttcc |
13576294 |
T |
|
| Q |
478 |
attccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
577 |
Q |
| |
|
|||||| ||| | ||||| ||||| ||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13576295 |
attccaaagattggttcgagaaattgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
13576394 |
T |
|
| Q |
578 |
cttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13576395 |
cttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattc |
13576470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 410 - 653
Target Start/End: Complemental strand, 34571695 - 34571452
Alignment:
| Q |
410 |
ggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcagg |
509 |
Q |
| |
|
||||| ||||| ||||||||||| || |||||||||||||||||||| ||| |||| | || |||||||||||| | |||||||||||||| ||||||| |
|
|
| T |
34571695 |
ggaacagttgctcttcgtgagatacgtaagtatcagaagagtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagg |
34571596 |
T |
|
| Q |
510 |
atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctg |
609 |
Q |
| |
|
||||||| || ||| | |||||||| ||| ||| ||| || ||||| ||||| || ||||| ||| | |||||||||||||||||||| ||| | || |
|
|
| T |
34571595 |
atttcaagacggatttacgattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtg |
34571496 |
T |
|
| Q |
610 |
tgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
||| |||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
34571495 |
tgcaattcatgctaagagggttaccattatgcctaaggatattc |
34571452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 278 - 628
Target Start/End: Complemental strand, 34579295 - 34578945
Alignment:
| Q |
278 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg |
377 |
Q |
| |
|
||||| ||||| |||||||| ||||||| ||||||| || || ||||||||||| || || ||||| || ||||| || ||||||| || |||||| |
|
|
| T |
34579295 |
atggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaacaaccg |
34579196 |
T |
|
| Q |
378 |
gaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttcc |
477 |
Q |
| |
|
| ||| |||||||||| || | | ||||||||||| ||||| ||||||||||| || |||||||||||| ||||||| ||| |||| | || ||||| |
|
|
| T |
34579195 |
gcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttcc |
34579096 |
T |
|
| Q |
478 |
attccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
577 |
Q |
| |
|
||||||| | |||||||||||||| |||||| ||||||| |||||| | ||||||| ||| ||| ||| || ||||| ||||| | ||||||||| |
|
|
| T |
34579095 |
attccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttat |
34578996 |
T |
|
| Q |
578 |
cttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagg |
628 |
Q |
| |
|
| |||||||||||||||||||| ||| | ||||| ||||||||||||||| |
|
|
| T |
34578995 |
ttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagg |
34578945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 278 - 628
Target Start/End: Complemental strand, 34585044 - 34584694
Alignment:
| Q |
278 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg |
377 |
Q |
| |
|
||||| ||||| |||||||| ||||||| ||||||| || || ||||||||||| || || ||||| || ||||| || ||||||| || |||||| |
|
|
| T |
34585044 |
atggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaacaaccg |
34584945 |
T |
|
| Q |
378 |
gaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttcc |
477 |
Q |
| |
|
| ||| |||||||||| || | | ||||||||||| ||||| ||||||||||| || |||||||||||| ||||||| ||| |||| | || ||||| |
|
|
| T |
34584944 |
gcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttcc |
34584845 |
T |
|
| Q |
478 |
attccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
577 |
Q |
| |
|
||||||| | |||||||||||||| |||||| ||||||| |||||| | ||||||| ||| ||| ||| || ||||| ||||| | ||||||||| |
|
|
| T |
34584844 |
attccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttat |
34584745 |
T |
|
| Q |
578 |
cttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagg |
628 |
Q |
| |
|
| |||||||||||||||||||| ||| | ||||| ||||||||||||||| |
|
|
| T |
34584744 |
ttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagg |
34584694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 404 - 653
Target Start/End: Complemental strand, 34562910 - 34562658
Alignment:
| Q |
404 |
cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg |
503 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| || || || ||||||||| |||| ||| |||| | ||||||||||||||| | |||||||||||||| | |
|
|
| T |
34562910 |
cgtcctggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattg |
34562811 |
T |
|
| Q |
504 |
ctcagg---atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac |
600 |
Q |
| |
|
|||| | || |||| | ||| | ||||||| || ||| ||| || ||||| ||||| || ||||| ||| | |||||||||||||||||||| |
|
|
| T |
34562810 |
ctcatgttgatctcaagccggatttcagattccagagtcatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggatac |
34562711 |
T |
|
| Q |
601 |
taatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
||| | ||||| |||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
34562710 |
caatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattc |
34562658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 333
Target Start/End: Complemental strand, 34571857 - 34571802
Alignment:
| Q |
278 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaa |
333 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||| || || ||||||||||| |
|
|
| T |
34571857 |
atggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaaggaa |
34571802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 278 - 653
Target Start/End: Original strand, 21317321 - 21317696
Alignment:
| Q |
278 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg |
377 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||||||||||||| ||| | ||||| || ||||||||||| || |||||||| |||||||| |||| |
|
|
| T |
21317321 |
atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgaccg |
21317420 |
T |
|
| Q |
378 |
gaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttcc |
477 |
Q |
| |
|
||||||| |||||||||||| | |||||||| ||||| || || |||||||| ||||||||||| |||||||| || |||||||||||||| || ||||| |
|
|
| T |
21317421 |
gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttcc |
21317520 |
T |
|
| Q |
478 |
attccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
577 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21317521 |
attccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttat |
21317620 |
T |
|
| Q |
578 |
cttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || || |||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
21317621 |
cttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
21317696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 278 - 653
Target Start/End: Complemental strand, 3930342 - 3929967
Alignment:
| Q |
278 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg |
377 |
Q |
| |
|
||||| |||||||| |||||||| || ||||||||||| |||||||| ||| ||||||| || ||||||||||| || | ||||| || |||||||||| |
|
|
| T |
3930342 |
atggcacgtaccaaacaaacagcacgaaaatccaccggaggaaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaaccg |
3930243 |
T |
|
| Q |
378 |
gaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttcc |
477 |
Q |
| |
|
| || || ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| || || ||||| || ||||| ||||| |
|
|
| T |
3930242 |
gtggtgtaaagaaaccacacagattccgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttcc |
3930143 |
T |
|
| Q |
478 |
attccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
577 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3930142 |
attccaaagattggttcgtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgtat |
3930043 |
T |
|
| Q |
578 |
cttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
3930042 |
cttgttggtttgtttgaagatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattc |
3929967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 377 - 652
Target Start/End: Complemental strand, 3928891 - 3928616
Alignment:
| Q |
377 |
ggaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttc |
476 |
Q |
| |
|
|||||| | |||||||||||||||||| | || ||||| || ||| | ||||| ||| | |||||||| |||| || |||||||| || ||||| |||| |
|
|
| T |
3928891 |
ggaggaatgaagaagccacacagattcagaccaggaacagtcgcattgcgtgaaatcaggaagtatcaaaagatcactgagcttctcattaggaaacttc |
3928792 |
T |
|
| Q |
477 |
cattccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagctta |
576 |
Q |
| |
|
| ||| | ||| | |||| |||||||||||||||||||||||| ||||| |||||||| | ||| ||||||||||||||||||||| |||||||| | |
|
|
| T |
3928791 |
ctttcaaaagattggttcatgaaatcgctcaggatttcaaaactgatctccgattccagatcagcgctgtttctgctcttcaagaaatcgctgaagcgtg |
3928692 |
T |
|
| Q |
577 |
tcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatatt |
652 |
Q |
| |
|
| |||||||||||||||| |||| ||||| ||||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
3928691 |
tattgttggtttgtttgaagatatgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatatt |
3928616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 278 - 653
Target Start/End: Original strand, 30759 - 31133
Alignment:
| Q |
278 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg |
377 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||||||||||||| ||| | ||||| || ||||||||||| || |||||||| |||||||| |||| |
|
|
| T |
30759 |
atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgaccg |
30858 |
T |
|
| Q |
378 |
gaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttcc |
477 |
Q |
| |
|
||||||| |||||||||||| | |||||||| ||||| || || |||||||| ||||||||||| |||||||| || |||||||||||||| || |||| |
|
|
| T |
30859 |
gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc- |
30957 |
T |
|
| Q |
478 |
attccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
577 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30958 |
attccaacgtcttgttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
31057 |
T |
|
| Q |
578 |
cttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || || |||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
31058 |
cttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattc |
31133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 6e-85; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 278 - 653
Target Start/End: Original strand, 24860293 - 24860668
Alignment:
| Q |
278 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg |
377 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||| ||||||||||| ||||| || |||| |
|
|
| T |
24860293 |
atggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccg |
24860392 |
T |
|
| Q |
378 |
gaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttcc |
477 |
Q |
| |
|
| ||||| ||||| || ||| | |||||||| ||||| ||||||||||| || ||||||||||| || || || || |||||||| || | || ||||| |
|
|
| T |
24860393 |
gcggagtgaagaaacctcaccgtttccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttcc |
24860492 |
T |
|
| Q |
478 |
attccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
577 |
Q |
| |
|
|||||| | || ||||||||||||||||| ||||||||||| ||||| || ||||| || || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24860493 |
attccaacgtctcgttcgtgaaatcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttat |
24860592 |
T |
|
| Q |
578 |
cttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
|| ||||| | ||||| ||||| ||||| || || |||||||||||||| ||||| || ||||| |||||||||| |
|
|
| T |
24860593 |
ctcgttggactctttgaagatacaaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattc |
24860668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 278 - 651
Target Start/End: Original strand, 34748502 - 34748875
Alignment:
| Q |
278 |
atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg |
377 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| || || ||||| |||||||| || || ||||| ||||| || || |||||||||||||| |||| |
|
|
| T |
34748502 |
atggcacgtaccaagcaaaccgctcgcaaatccactggaggtaaagctccaaggaagcaactagccacaaaagccgctcgcaaatctgctccggccaccg |
34748601 |
T |
|
| Q |
378 |
gaggagtcaagaagccacacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttcc |
477 |
Q |
| |
|
| ||||| ||||| || ||| | ||| | || ||||| || || || ||||||||||| ||||| |||||||| ||||| || || || | || || || |
|
|
| T |
34748602 |
gtggagtgaagaaacctcaccgtttcagaccaggaaccgtcgctctacgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaactccc |
34748701 |
T |
|
| Q |
478 |
attccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttat |
577 |
Q |
| |
|
|||||| | || |||||||| ||||||||||||||||| || ||||| || ||||| ||| || || || || || |||||||| ||||| |||||| |
|
|
| T |
34748702 |
cttccagcgtctggttcgtgagatcgctcaggatttcaagactgatctccgtttccagagctccgccgtgtcggcgctgcaagaagcggctgaggcttat |
34748801 |
T |
|
| Q |
578 |
cttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatat |
651 |
Q |
| |
|
|| |||||| | |||||||||||||| ||||||||||||||||| ||| | || |||||||||||||||||||| |
|
|
| T |
34748802 |
ctcgttggtctctttgaggatactaacctctgtgccattcatgccaagcgtgtcactatcatgcctaaggatat |
34748875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 515 - 633
Target Start/End: Original strand, 53290720 - 53290838
Alignment:
| Q |
515 |
aaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgcca |
614 |
Q |
| |
|
||||||||||| | ||||| |||| | |||||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||| || ||| ||| |
|
|
| T |
53290720 |
aaaacagatctcaggttccatagcaacgttgtttctgctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtacca |
53290819 |
T |
|
| Q |
615 |
ttcatgctaagagggttac |
633 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
53290820 |
ttcatgctaagaggattac |
53290838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 437 - 516
Target Start/End: Original strand, 40035830 - 40035909
Alignment:
| Q |
437 |
aagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaa |
516 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||||| ||||||||||| | ||||||||||| |||||||| ||||| |
|
|
| T |
40035830 |
aagtatcagaagagtactgagctcttgatcaggaagctcccattccagaggttggttcgtgaaattgctcaggacttcaa |
40035909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 525
Target Start/End: Complemental strand, 44771153 - 44771103
Alignment:
| Q |
475 |
tccattccagagacttgttcgtgaaatcgctcaggatttcaaaacagatct |
525 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44771153 |
tccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatct |
44771103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 648
Target Start/End: Original strand, 40036062 - 40036153
Alignment:
| Q |
557 |
caagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaagga |
648 |
Q |
| |
|
||||| ||||||||||| |||||||||||| | |||||||| ||||| | ||||| || ||||| ||| | |||||||| ||||| ||||| |
|
|
| T |
40036062 |
caagaggctgctgaagcatatcttgttggtctctttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaagga |
40036153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 516
Target Start/End: Original strand, 40045155 - 40045234
Alignment:
| Q |
437 |
aagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaa |
516 |
Q |
| |
|
||||| ||||||||||| ||||| |||| |||||||| || |||||||| | ||||||||||| |||||||| ||||| |
|
|
| T |
40045155 |
aagtaccagaagagtactgagctcttgatcaggaagctccccttccagaggttggttcgtgaaattgctcaggacttcaa |
40045234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 554 - 653
Target Start/End: Complemental strand, 7594236 - 7594137
Alignment:
| Q |
554 |
cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
653 |
Q |
| |
|
||||| ||||| ||||| ||||| || ||||| ||||||||||| || ||||| ||||| ||||||||||||||||| || || ||||| |||||||||| |
|
|
| T |
7594236 |
cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc |
7594137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 507 - 588
Target Start/End: Complemental strand, 17769314 - 17769233
Alignment:
| Q |
507 |
aggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggttt |
588 |
Q |
| |
|
||||||||||||||||||| ||||| | || ||| |||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
17769314 |
aggatttcaaaacagatctccgattttagagtagtactgtttctgctcttcaagaagccagtgtagcttatcttgttggttt |
17769233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 426 - 516
Target Start/End: Complemental strand, 7594492 - 7594402
Alignment:
| Q |
426 |
gtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaa |
516 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||| |||| | ||||||||||| ||| | ||||| |||||||| ||||| |||||||| |
|
|
| T |
7594492 |
gtgagatccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaa |
7594402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 7594979 - 7594907
Alignment:
| Q |
276 |
ccatggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaa |
348 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||| || || || |||||||| ||||| |||||||| |
|
|
| T |
7594979 |
ccatggctcgtaccaagcaaaccgctcgcaagtctaccggtggtaaggctccaaggaagcagctcgccaccaa |
7594907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 588
Target Start/End: Complemental strand, 1539263 - 1539185
Alignment:
| Q |
510 |
atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggttt |
588 |
Q |
| |
|
|||||||||||||||| ||||| | || ||| |||||||| ||||||||||||| || |||||||||||||||||| |
|
|
| T |
1539263 |
atttcaaaacagatctccgattttagagtagtactgtttcttctcttcaagaagccagtgtagcttatcttgttggttt |
1539185 |
T |
|
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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 507 - 588
Target Start/End: Original strand, 27440873 - 27440954
Alignment:
| Q |
507 |
aggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggttt |
588 |
Q |
| |
|
||||||||||||||||||| ||||| | || || ||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
27440873 |
aggatttcaaaacagatctccgattttagagtagcattgtttctgctcttcaagaagccagtgtagcttatcttgttggttt |
27440954 |
T |
|
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