View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9013_low_3 (Length: 626)
Name: NF9013_low_3
Description: NF9013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9013_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 17 - 614
Target Start/End: Complemental strand, 5035203 - 5034615
Alignment:
| Q |
17 |
aatatcgtcggtggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggtcgtgttgcaagatatgcgtttc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5035203 |
aatatcgtcggtggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggtcgtgttgctcgatatgcgtttc |
5035104 |
T |
|
| Q |
117 |
gtggtcctcgtcctcctctacaatatcaatgagcttcaagaaccagttgcagggaaaggagaataaaggctgaacttgcctcaccagtgatgaatgcaag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |
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| T |
5035103 |
gtggtcctcgtcctcctctacaatatcaatgagcttcaagaaccagttgcagggaaaggagaataaaagctgaacttgcctcactagtaatgaatgcaag |
5035004 |
T |
|
| Q |
217 |
atttcgattaaaacctgctacaaaaactaatttgcacaatggaaaccgatttgcagggcacacaataggtctattcgcaagtcatatattttcttgtaga |
316 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5035003 |
atttcga----------ctacaaaaactaatttgcacaatggaaaccgatttgcagggcacacaccaggtctattcgcaagtcatatattttcttgtaga |
5034914 |
T |
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| Q |
317 |
acaaatagtggtattcaagtaaggattcgggtgcaactgttcacattaggcatccgcacaacattgaattagatgacttgatttttatatagttttggca |
416 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5034913 |
acaaataatggtattcaagtaaggattcgggtgcaactgttcacattaggcatccgcacaacattgaattagatgacttgatttttatttagttttggca |
5034814 |
T |
|
| Q |
417 |
gaactggaaggaaaatttactacttcagatgatataaggatgttatattcttacttgattttattatcaaacttgtgtctagtagatgttcgtttgttac |
516 |
Q |
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| T |
5034813 |
gaactggaaggaaaatttactacttcagatgatctaaggatgttatattcttacttgattttattatcaaacttgtgtctagtagatgttcgtttgttac |
5034714 |
T |
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| Q |
517 |
tcaatc-tgttttatgtgcttagaatgttaataattattcaaaatcttttaccagttttatgtttaacattcaacacatctttttaatttggctgaatc |
614 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
5034713 |
tcaatcttcctttatgtgcttagaatgttaataattattcaaagtcttttaccagttttatgtttaacattcaatacatctttttaatttggttgaatc |
5034615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 158 - 290
Target Start/End: Complemental strand, 2533246 - 2533112
Alignment:
| Q |
158 |
accagttgcagggaaaggagaataaaggctgaacttgcctcaccagtgatgaatgcaagatttcgattaaaacctgctacaaaaactaatttgcacaatg |
257 |
Q |
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|||| |||||||||| ||||||||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
2533246 |
accacttgcagggaatggagaataagagctgaacatgcctcacaagtgatgaatgcaggatttcgattaaaacctgctgcaaaaactaatttgcacaaat |
2533147 |
T |
|
| Q |
258 |
gaaa--ccgatttgcagggcacacaataggtctat |
290 |
Q |
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| T |
2533146 |
gagatgctgatttgcagggcacacaacaggtctat |
2533112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 2533894 - 2533820
Alignment:
| Q |
17 |
aatatcgtcggtggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggt |
94 |
Q |
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||||||||| ||| ||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||| |
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| T |
2533894 |
aatatcgtcagtgagcactcaattaaaaatctctgcaagaactgtgac---cttcaagagctcaaagtggttggtggt |
2533820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 2525322 - 2525262
Alignment:
| Q |
31 |
acactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggt |
94 |
Q |
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||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
2525322 |
acactcagttaagaatctctgcaggaactgtgaccttc---aagaggtcaaagtggttggtggt |
2525262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 2490694 - 2490641
Alignment:
| Q |
32 |
cactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtg |
85 |
Q |
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|||||| |||| |||||||||||| |||||||||||||||||||| ||||||| |
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| T |
2490694 |
cactcagttaaagatctctgcaagaactgtgaccttcttcaagaggccaaagtg |
2490641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 401 - 449
Target Start/End: Complemental strand, 2489630 - 2489582
Alignment:
| Q |
401 |
ttatatagttttggcagaactggaaggaaaatttactacttcagatgat |
449 |
Q |
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| T |
2489630 |
ttataaagttctggcagaacttgaatgaaaatttactacttcagatgat |
2489582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 2489740 - 2489687
Alignment:
| Q |
300 |
atatattttcttgtagaacaaatagtggtattcaagtaaggattcgggtgcaact |
354 |
Q |
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||||||||| |||||||||||| || |||| ||||||||||||| |||||||||| |
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| T |
2489740 |
atatatttt-ttgtagaacaaacagaggtagtcaagtaaggatttgggtgcaact |
2489687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 5095577 - 5095638
Alignment:
| Q |
298 |
tcatatattttcttgtagaacaaatagtggtattcaagtaaggattcgggtgcaactgttca |
359 |
Q |
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|||| |||||||||| ||||||||||| |||| ||||||| |||| |||||||||||||| |
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| T |
5095577 |
tcatgtattttcttgaagaacaaatagaggtagtcaagtacagattttggtgcaactgttca |
5095638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 2460147 - 2460107
Alignment:
| Q |
45 |
atctctgcaagagctgtgaccttcttcaagaggtcaaagtg |
85 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||| |
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| T |
2460147 |
atctttgcaagaattgtgaccttcttcaagaggtcaaagtg |
2460107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 2532923 - 2532875
Alignment:
| Q |
454 |
ggatgttatattcttacttgattttattatcaaacttgtgtctagtaga |
502 |
Q |
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||||||| ||||||||| |||||||| ||| || ||||||||||||||| |
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| T |
2532923 |
ggatgttctattcttacctgattttaatattaaccttgtgtctagtaga |
2532875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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