View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9013_low_9 (Length: 246)
Name: NF9013_low_9
Description: NF9013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9013_low_9 |
 | |
|
| [»] chr3 (10 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 11155989 - 11156229
Alignment:
| Q |
6 |
tgagatggacatcaacaagcaacctgcacaacaagaaacaagtatgaggccaggaaaagcgaaagagcagtggcggaacttgaataattttacgaggaag |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11155989 |
tgagatgaacatcaacaagcaacctgcacaacaagaaacaagtatgaggccaggaaaagcgaaagagcagtggtggaacttgaataattttacgaggaag |
11156088 |
T |
|
| Q |
106 |
tgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacacctatgaactctaacttgagattgtccaaca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156089 |
tgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacacctatgaactctaacttgagattgtccaaca |
11156188 |
T |
|
| Q |
206 |
aaatcaagaaaagtactaataagctttcagtatcacacagc |
246 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
11156189 |
aaatcaagaaaagtactagtaagttttcagtatcacacagc |
11156229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 11144811 - 11145054
Alignment:
| Q |
6 |
tgagatggacatcaacaagcaacctgcacaacaagaaacaagtat---gaggccaggaaaagcgaaagagcagtggcggaacttgaataattttacgagg |
102 |
Q |
| |
|
||||||| |||||| |||||||||| ||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11144811 |
tgagatgaacatcagcaagcaacctacaccacaagaagcaagtattatgagtccaggaaaagcgaaagagcagtggcggaacttgaataattttacgagg |
11144910 |
T |
|
| Q |
103 |
aagtgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacacctatgaactctaacttgagattgtcca |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
11144911 |
aagtgaaagatatacaaccgcataataaaattatttatataccaaatatgtaataaaatgaatgttacaacacctatgaaatctaacttcagattgtcca |
11145010 |
T |
|
| Q |
203 |
acaaaatcaagaaaagtactaataagctttcagtatcacacagc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11145011 |
acaaaatcaagaaaagtactaataagctttcagtatcacacagc |
11145054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 6 - 175
Target Start/End: Complemental strand, 8865643 - 8865476
Alignment:
| Q |
6 |
tgagatggacatcaacaagcaacctgcacaacaagaaacaagtatgaggccaggaaaagcgaaagagcagtggcggaacttgaataattttacgaggaag |
105 |
Q |
| |
|
||||||| |||||| |||||||||| ||||||||||| |||||||||| |||||||||| |||| |||| |||||| |||||||| ||| | ||||||| |
|
|
| T |
8865643 |
tgagatgaacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
8865544 |
T |
|
| Q |
106 |
tgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacac |
175 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8865543 |
cgaaagatatacaaccacataataaaattatt--tataccaaatatgtaataaaatgaatgttacaacac |
8865476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 6 - 175
Target Start/End: Complemental strand, 10893256 - 10893089
Alignment:
| Q |
6 |
tgagatggacatcaacaagcaacctgcacaacaagaaacaagtatgaggccaggaaaagcgaaagagcagtggcggaacttgaataattttacgaggaag |
105 |
Q |
| |
|
||||||| |||||| |||||||||| ||||||||||| |||||||||| |||||||||| |||| |||| |||||| |||||||| ||| | ||||||| |
|
|
| T |
10893256 |
tgagatgaacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
10893157 |
T |
|
| Q |
106 |
tgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacac |
175 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10893156 |
cgaaagatatacaaccacataataaaattatt--tatactgaatatgtaataaaatgaatgttacaacac |
10893089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 11127114 - 11127282
Alignment:
| Q |
6 |
tgagatggacatcaacaagcaacctgcacaacaagaaa-caagtatgaggccaggaaaagcgaaagagcagtggcggaacttgaataattttacgaggaa |
104 |
Q |
| |
|
||||||| |||||| |||||||||| |||||||||||| |||||||||| |||||||||| |||| |||| |||||| |||||||| ||| | || ||| |
|
|
| T |
11127114 |
tgagatgaacatcagcaagcaacctacacaacaagaaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgatgaa |
11127213 |
T |
|
| Q |
105 |
gtgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacac |
175 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11127214 |
gcgaaagatatacaaccacataataaaattatt--tatactgaatatgtaataaaatgaatgttacaacac |
11127282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 11193195 - 11193137
Alignment:
| Q |
188 |
acttgagattgtccaacaaaatcaagaaaagtactaataagctttcagtatcacacagc |
246 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
11193195 |
acttgagattgttcaacaaaatcaagaaaagtactactaagttttcagtattacacagc |
11193137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 8868058 - 8867985
Alignment:
| Q |
164 |
atgttacaacacctatgaactctaacttgagattgtccaacaaaatcaagaaaagtactaataagctttcagta |
237 |
Q |
| |
|
||||||||| ||| || || ||| |||||||||||| ||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
8868058 |
atgttacaataccgattaagtctgacttgagattgttcaacaaaatcaagaaaagtactactaagttttcagta |
8867985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 10895765 - 10895692
Alignment:
| Q |
164 |
atgttacaacacctatgaactctaacttgagattgtccaacaaaatcaagaaaagtactaataagctttcagta |
237 |
Q |
| |
|
||||||||| ||| || || ||| |||||||||||| ||||||||||||||||||||||| || | |||||||| |
|
|
| T |
10895765 |
atgttacaataccgattaagtctgacttgagattgttcaacaaaatcaagaaaagtactactatgttttcagta |
10895692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 11142767 - 11142825
Alignment:
| Q |
164 |
atgttacaacacctatgaactctaacttgagattgtccaacaaaatcaagaaaagtact |
222 |
Q |
| |
|
||||||||| ||| || || ||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
11142767 |
atgttacaataccgattaagtctgacttgagattgttcaacaaaatcaagaaaagtact |
11142825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 8865453 - 8865412
Alignment:
| Q |
205 |
aaaatcaagaaaagtactaataagctttcagtatcacacagc |
246 |
Q |
| |
|
|||||| |||||||||||| |||| ||||||||||||||||| |
|
|
| T |
8865453 |
aaaatctagaaaagtactattaagttttcagtatcacacagc |
8865412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University