View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9014_low_1 (Length: 636)
Name: NF9014_low_1
Description: NF9014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9014_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 18 - 620
Target Start/End: Original strand, 41571320 - 41571920
Alignment:
| Q |
18 |
caaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttattcatagcattgttaatggtggttatgatgcaccnnnnnnngtgacaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
41571320 |
caaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttgttcaaagcattgttaatggttgttatgatgcacctttttttgtgacaag |
41571419 |
T |
|
| Q |
118 |
gtttaaggaagctgttttttattattcagcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctgttaggttgatgtttgagggagac |
217 |
Q |
| |
|
|||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
41571420 |
gtttaaagaagctgtttttcattactcatcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctaataggttgatgtttgaggaagag |
41571519 |
T |
|
| Q |
218 |
gtttgggggaaagatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatatatgcattggcattctaggcacatgggaa |
317 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
41571520 |
ttttgggggaaggatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatataggcaatggcattttaggcacatgggaa |
41571619 |
T |
|
| Q |
318 |
atgggtttaggtctttgaaattggataagcagattataaataaattgaagtgtaagttgagagatgatgcatataatagtgattttctgtttgaggtgaa |
417 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41571620 |
atgggtttaagtctttgaaattggataagcagattatagataaattgaagtgtaagttgagagatgatgcatataatagtgattttctgtttgaggtgaa |
41571719 |
T |
|
| Q |
418 |
tgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggattccagcatagagcttcacaacatgttgggagtaaactaac |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41571720 |
tgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggattccagcatagagcttcacaacatgttgggagtaaactaac |
41571819 |
T |
|
| Q |
518 |
atttttgttcttgaaaattgttatgaaactagctattaaaattaatgaaagacttatatattgctttgaataatctcaggatgcattaggacaaactaaa |
617 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41571820 |
atttttgttcttgaaaattgttatgaaaatagctattaaaattaatgaaagacttatatattgctttgaataatctc--gatgcattaggacaaactaaa |
41571917 |
T |
|
| Q |
618 |
act |
620 |
Q |
| |
|
||| |
|
|
| T |
41571918 |
act |
41571920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 22 - 619
Target Start/End: Original strand, 41583741 - 41584339
Alignment:
| Q |
22 |
gggtgctgttttggatttgattaagaaggcaaatccgaatatatttattcatagcattgttaatggtggttatgatgcaccnnnnnnngtgacaaggttt |
121 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
41583741 |
gggtgatgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaatggtggttacgatgaacctttttttgtgacaaggttt |
41583840 |
T |
|
| Q |
122 |
aaggaagctgttttttattattcagcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctgttaggttgatgtttgagggagacgttt |
221 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| || ||| |
|
|
| T |
41583841 |
aaggaagctgtttttcattattcagcattgtttgatacgcttgatcacaacaatgttgaacgtgaggatcctattaggttgatgtttgaggaagtgtttt |
41583940 |
T |
|
| Q |
222 |
gggggaaagatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatatatgcattggcattctaggcacatgggaaatgg |
321 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |||||| |
|
|
| T |
41583941 |
gggggaaggatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatacaggcattggcattctaggcacatagtaaatgg |
41584040 |
T |
|
| Q |
322 |
gtttaggtcttt-gaaattggataagcagattataaataaattgaagtgtaagttgagagatgatgcatataatagtgattttctgtttgaggtgaatga |
420 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
41584041 |
gtttaggtcttttgaaattgaataagcagattatagataaattgaagggtaggttgagaaatgatgcatataatagtgattttttatttgaggtgaatga |
41584140 |
T |
|
| Q |
421 |
aaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggattccagcatagagcttcacaacatgttgggagtaaactaacatt |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
41584141 |
aaattggatgctacaaggttggaagggtagaattctatttggttcttcatgttgggttccagcatagaccttcacaacatgttgggagtaaattaacatt |
41584240 |
T |
|
| Q |
521 |
tttgttcttgaaaattgttatgaaactagctattaaaattaatgaaagacttatatattgctttgaataatctcaggatgcattaggacaaactaaaac |
619 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41584241 |
ttcgttcttgaaaattgttatgaaactagctattaaaattaatgaaagacttatatattgctttgaataatcccaggatgcattaggacaaactaaaac |
41584339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 20 - 530
Target Start/End: Original strand, 41590270 - 41590780
Alignment:
| Q |
20 |
aggggtgctgttttggatttgattaagaaggcaaatccgaatatatttattcatagcattgttaatggtggttatgatgcaccnnnnnnngtgacaaggt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41590270 |
aggggtgctgttttggatttgattaagaaggcaaatccgaatatatttattcatagcattgttaatggtggttatgatgcacctttttttgtgacaaggt |
41590369 |
T |
|
| Q |
120 |
ttaaggaagctgttttttattattcagcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctgttaggttgatgtttgagggagacgt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| || | |
|
|
| T |
41590370 |
ttaaggaagctgttttttattattcagcattgtttgatatgcttgattacaacaatgttgaacgtgaggatccttttaggttgatgtttgaggtagtttt |
41590469 |
T |
|
| Q |
220 |
ttgggggaaagatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatatatgcattggcattctaggcacatgggaaat |
319 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41590470 |
ttgggggaatgatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatatatgcattggcattctaggcacatgggaaat |
41590569 |
T |
|
| Q |
320 |
gggtttaggtctttgaaattggataagcagattataaataaattgaagtgtaagttgagagatgatgcatataatagtgattttctgtttgaggtgaatg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41590570 |
gggtttaggtctttgaaattggataagcagattataaataaattgaagtgtaagttgagagatgatgcatataatagtgattttctgtttgaggtgaatg |
41590669 |
T |
|
| Q |
420 |
aaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggattccagcatagagcttcacaacatgttgggagtaaactaacat |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | |||||||||| |||||| |
|
|
| T |
41590670 |
aaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggattccaacatagaccttcacaactaggtgggagtaaattaacat |
41590769 |
T |
|
| Q |
520 |
ttttgttcttg |
530 |
Q |
| |
|
|| ||| |||| |
|
|
| T |
41590770 |
ttctgtgcttg |
41590780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 22 - 538
Target Start/End: Original strand, 41557612 - 41558128
Alignment:
| Q |
22 |
gggtgctgttttggatttgattaagaaggcaaatccgaatatatttattcatagcattgttaatggtggttatgatgcaccnnnnnnngtgacaaggttt |
121 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
41557612 |
gggtgctgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaatggtggttacgatgaacctttttttgtgacaaggttt |
41557711 |
T |
|
| Q |
122 |
aaggaagctgttttttattattcagcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctgttaggttgatgtttgagggagacgttt |
221 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41557712 |
aaggaagctgtttttcattattcagcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctgttaggttgatgtttgagggagacgttt |
41557811 |
T |
|
| Q |
222 |
gggggaaagatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatatatgcattggcattctaggcacatgggaaatgg |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| |
|
|
| T |
41557812 |
gggggaaagatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatacaggcattggcattctaggcacataggaaatgg |
41557911 |
T |
|
| Q |
322 |
gtttaggtctttgaaattggataagcagattataaataaattgaagtgtaagttgagagatgatgcatataatagtgattttctgtttgaggtgaatgaa |
421 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
41557912 |
gtttaggtctttgaaattgaataagcagattatagataaattgaagggtaggttgagaaatgatgcatataatagtgattttttatttgaggtgaatgaa |
41558011 |
T |
|
| Q |
422 |
aattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggattccagcatagagcttcacaacatgttgggagtaaactaacattt |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
41558012 |
aattggatgctacaaggttggaagggtagaattctatttggttcttcatgttgggttccagcatagaccttcacaatatgttgggagtaaatcaacattt |
41558111 |
T |
|
| Q |
522 |
ttgttcttgaaaattgt |
538 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
41558112 |
ttgttcttgaaaattgt |
41558128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 542 - 619
Target Start/End: Original strand, 41590859 - 41590936
Alignment:
| Q |
542 |
gaaactagctattaaaattaatgaaagacttatatattgctttgaataatctcaggatgcattaggacaaactaaaac |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
41590859 |
gaaactagctattaaaattaatgaaagacttatatattgctttgaacaatctcaggatgcattaagacaaactaaaac |
41590936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 41598570 - 41598622
Alignment:
| Q |
236 |
atgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacata |
288 |
Q |
| |
|
||||||||| |||| |||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
41598570 |
atgaatgttgtagcatgtgaaggttttgagagggttgagaggcccgagacata |
41598622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 22546323 - 22546375
Alignment:
| Q |
237 |
tgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatat |
289 |
Q |
| |
|
||||||||||||| |||||||||||||| || || |||||||||||||||||| |
|
|
| T |
22546323 |
tgaatgttatagcctgtgaaggttgtgagagagtagagaggccagagacatat |
22546375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 23916192 - 23916101
Alignment:
| Q |
197 |
aggttgatgtttgagggagacgtttgggggaaagatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacata |
288 |
Q |
| |
|
||||||||||||||| ||| | ||||||| || |||||||| ||||||| |||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
23916192 |
aggttgatgtttgagaaagagttctgggggagggaagtaatgaatattatagcctgtgaaggttctcagagggttgagaggccagagacata |
23916101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 23911611 - 23911557
Alignment:
| Q |
236 |
atgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatata |
290 |
Q |
| |
|
||||| ||| ||||||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
23911611 |
atgaacgttgtagcttgtgaaggtttagagagagttgagaggccagagacatata |
23911557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University