View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9014_low_3 (Length: 455)
Name: NF9014_low_3
Description: NF9014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9014_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 228 - 454
Target Start/End: Original strand, 36732435 - 36732661
Alignment:
| Q |
228 |
taaaacaaattttgagaataatttttaaagatctgctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttcat |
327 |
Q |
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| T |
36732435 |
taaaacaaattttgagaataatttttaaagatctgctaatccgactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttcat |
36732534 |
T |
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| Q |
328 |
aatggtccttgacacactaaaacaactttcattggttggaagcgttcacatgacggatgggttaaactcaattgtgatagggcatttaaagagaatggaa |
427 |
Q |
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| T |
36732535 |
aatgatccttgacatactaaaacaactttcattggttggaagcgttctcatgaaggatgggttaaactcaattgtaatagggcatttaaagagaatggaa |
36732634 |
T |
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| Q |
428 |
atcgtgtggggtgtggcggtcttcttc |
454 |
Q |
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| T |
36732635 |
attgtgtggggtgttgcggtcttcttc |
36732661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 36730839 - 36731005
Alignment:
| Q |
14 |
tttggagtttggtttatgctataattttttggcattagtttccattattcnnnnnnnnnnnn--aaaggtatttccattattcatactatataatatcat |
111 |
Q |
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| T |
36730839 |
tttggagtttggtttatgctataattttttggcataagtttccattattcttttttttttttttaaaggtgtttccattattcatactatataatatcat |
36730938 |
T |
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| Q |
112 |
tttaatgatgctctaacaaatcataaagcaataatgagattatactgtccagaagttttcgtgagat |
178 |
Q |
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| T |
36730939 |
tttaatgatgctctaacaaatcataaagcaataatgagattatactgtcctgaagttttcgtgagat |
36731005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 36731609 - 36731655
Alignment:
| Q |
184 |
atttaagtacttaagttatatctccacgtctagctcagcatacttaa |
230 |
Q |
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| T |
36731609 |
atttaagtacttaagttatatctctacgtctagctcatcatacttaa |
36731655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 228 - 455
Target Start/End: Complemental strand, 41550578 - 41550351
Alignment:
| Q |
228 |
taaaacaaattttgagaataatttttaaagatctgctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttcat |
327 |
Q |
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| T |
41550578 |
taaaacaatttttgaggataattttcaaagaccagctaatccaactagtgtcattcaggccttctctagcactatcgaagattgcaccaataatcttctt |
41550479 |
T |
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| Q |
328 |
aatggtccttgacacactaaaacaactttcattggttggaagcgttcacatgacggatgggttaaactcaattgtgatagggcatttaaagagaatggaa |
427 |
Q |
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| T |
41550478 |
caaggtcctcggcacactgaaacaattttcattggttggaagcatcctcaggagggatgggttaaactcaattgtgatggggcatgcaaagagaatggaa |
41550379 |
T |
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| Q |
428 |
atcgtgtggggtgtggcggtcttcttcg |
455 |
Q |
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| T |
41550378 |
atcgtgcggggtgtggcggtcttcttcg |
41550351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 262 - 453
Target Start/End: Original strand, 37752240 - 37752433
Alignment:
| Q |
262 |
gctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttcat---aatggtccttgacacactaaaacaactttca |
358 |
Q |
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| T |
37752240 |
gctaatccaactagtgtcattcaaatgttctctagcactatcgaagattgcaccaataatcttcttcagaatggtcctcaacacactgaaacggttttca |
37752339 |
T |
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| Q |
359 |
ttggttggaagcgttcacatgacggatgggttaaactcaattgtgatagggcatttaaagagaatggaaatcgtgtggggtgtggcggtcttctt |
453 |
Q |
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| T |
37752340 |
ttggttggaagtgtcctcatgagggatgg-ttaaactcaattatgatgggacgtgcaaatagaatggaaatcgtgtgggttgtggcagtcttctt |
37752433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 430
Target Start/End: Original strand, 30901679 - 30901754
Alignment:
| Q |
355 |
ttcattggttggaagcgttcacatgacggatgggttaaactcaattgtgatagggcatttaaagagaatggaaatc |
430 |
Q |
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| T |
30901679 |
ttcattggtcggaagcatcctcatgagggatgagttaaactaaattgtgatggggcatgcaaagagaatggaaatc |
30901754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 262 - 452
Target Start/End: Complemental strand, 29515562 - 29515374
Alignment:
| Q |
262 |
gctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttcataatggtccttgacacactaaaacaactttcattg |
361 |
Q |
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||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||| ||||| | | |||||| |||| || || ||| ||||| || |
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| T |
29515562 |
gctaatccaactagtgtcatccaagccttctctagaactttcgaagactacaccaatactcttcttca-ggtcctcgacatgctgaaccaattttcactg |
29515464 |
T |
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| Q |
362 |
gttggaagcgttcacatgacggatgggttaaactcaattgtgatagggcatttaaagagaatggaaatcgtgtggggtgtggcggtcttct |
452 |
Q |
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| T |
29515463 |
gctggaagcatcctcaggaaggatggattaaactcaattgtgat-gggcgtgcaaagagaatggaaatcatgtggggtgcggtggtcttct |
29515374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 442
Target Start/End: Original strand, 6260936 - 6261053
Alignment:
| Q |
325 |
cataatggtccttgacacactaaaacaactttcattggttggaagcgttcacatgacggatgggttaaactcaattgtgatagggcatttaaagagaatg |
424 |
Q |
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|||| ||||| | |||||| | |||||| ||| ||||||||||||||| | ||||| ||||| ||||||||||||||||| |||| | |||||||||| |
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| T |
6260936 |
catattggtcatcgacacattgaaacaatttttattggttggaagcgtcctcatgagagatggattaaactcaattgtgatggggcgtgcaaagagaatg |
6261035 |
T |
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| Q |
425 |
gaaatcgtgtggggtgtg |
442 |
Q |
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| T |
6261036 |
gagaccatgtggggtgtg |
6261053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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