View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9014_low_4 (Length: 382)

Name: NF9014_low_4
Description: NF9014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9014_low_4
NF9014_low_4
[»] chr7 (4 HSPs)
chr7 (23-359)||(36732639-36732977)
chr7 (181-228)||(6205407-6205454)
chr7 (181-228)||(6792779-6792826)
chr7 (103-170)||(30335740-30335807)
[»] chr5 (1 HSPs)
chr5 (13-307)||(41550089-41550384)
[»] chr1 (12 HSPs)
chr1 (13-271)||(37752402-37752660)
chr1 (30-254)||(5321467-5321690)
chr1 (33-272)||(30901773-30902016)
chr1 (92-255)||(9886377-9886540)
chr1 (181-226)||(19552755-19552800)
chr1 (181-228)||(7797868-7797915)
chr1 (181-228)||(8055142-8055189)
chr1 (181-228)||(28705316-28705363)
chr1 (181-228)||(46019186-46019233)
chr1 (181-228)||(46077336-46077383)
chr1 (181-228)||(49572822-49572869)
chr1 (181-228)||(33695937-33695984)
[»] chr8 (4 HSPs)
chr8 (13-307)||(29515112-29515404)
chr8 (181-224)||(11596891-11596934)
chr8 (181-228)||(24785153-24785200)
chr8 (181-228)||(35195792-35195839)
[»] chr6 (3 HSPs)
chr6 (40-148)||(6262016-6262124)
chr6 (184-307)||(6262130-6262254)
chr6 (187-332)||(20679159-20679305)
[»] scaffold0012 (1 HSPs)
scaffold0012 (181-228)||(109091-109138)
[»] chr4 (1 HSPs)
chr4 (181-228)||(54908301-54908348)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 23 - 359
Target Start/End: Original strand, 36732639 - 36732977
Alignment:
Q  23 tgtggggtgtggcggtcttcttcgggatactaatgacaaatggctcaaataatttgtgcgcaaaattgaagtttgtgatgctctgcatgcaaaaatgtgg 122  Q
    |||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  36732639 tgtggggtgttgcggtcttcttcaggatactaatgataaatggctcaaataatttgtgcgcaagattgaagtttgtgatgctctgcatgcagaaatgtgg 36732738  T
Q  123 ggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaataatt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||| ||||||||||||||||||    
T  36732739 ggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatattcgtctagaaagtgattcaaaattgtttattaacatggttacaaataatt 36732838  T
Q  223 gcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatctattaaccgtagttgacactttgaggttcatcatactcagcgataagacaat 322  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||       
T  36732839 gcaagactagttggacgaccacttcgttgattcagcgtatcaaaaatctattagacgtagttgacactttgaggttcatcatacttagcgataagac--- 36732935  T
Q  323 aatagaagtgcgat-----taacttgcgaatttcaacctcac 359  Q
    ||||||||||||||     |||||||||||||||||||||||    
T  36732936 aatagaagtgcgattaacgtaacttgcgaatttcaacctcac 36732977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 6205407 - 6205454
Alignment:
Q  181 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 228  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  6205407 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 6205454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 6792826 - 6792779
Alignment:
Q  181 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 228  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  6792826 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 6792779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 30335740 - 30335807
Alignment:
Q  103 ctctgcatgcaaaaatgtggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacat 170  Q
    |||| ||||||||||| | |||| ||||||| ||||| |||||||| ||||||||| || ||||||||    
T  30335740 ctcttcatgcaaaaattttgggtttgtatttcggtttagagctagcttgacgtgatagaatttcacat 30335807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 41550384 - 41550089
Alignment:
Q  13 atggacatcatgtggggtgtggcggtcttcttcgggatactaatgacaaatggctcaaataatttgtgcgcaaaattgaagtttgtgatgctctgcatgc 112  Q
    ||||| ||| || |||||||||||||||||||||||| ||||||||||| |||||||||  ||||||||||||||||| |||||| ||||||||||||||    
T  41550384 atggaaatcgtgcggggtgtggcggtcttcttcgggacactaatgacaagtggctcaaaggatttgtgcgcaaaattggagtttgcgatgctctgcatgc 41550285  T
Q  113 aaaaatgtggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggtt 212  Q
    | ||||||||||| | ||||| || ||||||||||| || || ||||||||||||||| || || || || | |||||||||||| ||||||||||||||    
T  41550284 agaaatgtggggtttatatttagggttggagctagcttggcgggatggagtttcacatctctgtgtggaaggcgattcaaaattgcttattgacatggtt 41550185  T
Q  213 acaaataattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatctatt-aaccgtagttgacactttgaggttcatcatact 307  Q
    ||||| || |||| ||||| | | |||||| |||||||||| |  ||||||| |||||| ||  | |||||||| ||| |||||||||||||||||    
T  41550184 acaaacaactgcaggactaatgggacgaccccttcgttgatgcggcgtatcagaaatcttttggatcgtagttggcacgttgaggttcatcatact 41550089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 37752402 - 37752660
Alignment:
Q  13 atggacatcatgtggggtgtggcggtcttcttcgggatactaatgacaaatggctcaaataatttgtgcgcaaaattgaagtttgtgatgctctgcatgc 112  Q
    ||||| ||| |||||| |||||| |||||||| ||||||||||||  | |||| |||||  |||||||||||| ||||  |||||||||||||| |||||    
T  37752402 atggaaatcgtgtgggttgtggcagtcttctttgggatactaatggtagatggttcaaaagatttgtgcgcaagattggtgtttgtgatgctctacatgc 37752501  T
Q  113 aaaaatgtggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggtt 212  Q
    | ||||||||||| ||||||| ||||| |||||||| || ||||||||| |||||||| || || || | ||||||||||||||||||||||||||||||    
T  37752502 agaaatgtggggtttgtattttggtttagagctagcttggcgtgatggaatttcacatctctgtatggagagtgattcaaaattgtttattgacatggtt 37752601  T
Q  213 acaaataattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatct 271  Q
    ||||||||||||||||||| | | |||||| |||| ||||||   ||||||| ||||||    
T  37752602 acaaataattgcaagactaatgggacgaccccttcattgatttggcgtatcagaaatct 37752660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 254
Target Start/End: Original strand, 5321467 - 5321690
Alignment:
Q  30 tgtggcggtcttcttcgggatactaatgacaaatggctcaaataatttgtgcgcaaaattgaagtttgtgatgctctgcatgcaaaaatgtggggtgtgt 129  Q
    ||||| ||||||||||| || ||| |||||| ||||||||||  |||||| ||||| |||| ||||||||||||||| |||||| |||| || ||| |||    
T  5321467 tgtggtggtcttcttcgcgacactgatgacagatggctcaaaggatttgtacgcaagattggagtttgtgatgctcttcatgcagaaatttgaggtttgt 5321566  T
Q  130 atttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaataattgcaagac 229  Q
    ||| || |||||||||||| ||| |||||||| |||||||| ||  | || ||||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  5321567 attagg-tttggagctagcttgaagtgatggaatttcacatctctatgtggaaagtgactcaaaattgcttattgatatggttacaaataattgcaagac 5321665  T
Q  230 tagttgaacgaccacttcgttgatt 254  Q
    || | |||||||| |||||||||||    
T  5321666 taatggaacgaccccttcgttgatt 5321690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 33 - 272
Target Start/End: Original strand, 30901773 - 30902016
Alignment:
Q  33 ggcggtcttcttcgggatactaatgacaaatggctcaaataatttgtgcgcaaaattgaagtttgtgatgctctgcatgcaaa--aatgtggggtgtgta 130  Q
    ||||||||||||||||||| ||||| |||||| |||||| |||||||| |||| |||| || |||||||||||||||| ||||  ||  |||||| | ||    
T  30901773 ggcggtcttcttcgggatagtaatggcaaatgactcaaagaatttgtgtgcaagattggagattgtgatgctctgcatacaaattaaattggggtttata 30901872  T
Q  131 tttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattg--tttattgacatggttacaaataattgcaaga 228  Q
    | |||||||||||||||| || |||||||||||||||||| || || || || |||||| |||||||  | |||||||||||||||||||||||||||||    
T  30901873 tctgggtttggagctagcctggcgtgatggagtttcacatctctgtgtggaaggtgattaaaaattgcttatattgacatggttacaaataattgcaaga 30901972  T
Q  229 ctagttgaacgaccacttcgttgattcaacgtatcaaaaatcta 272  Q
    |||   | ||||||  |||||||||||  ||||||| |||||||    
T  30901973 ctaacgggacgacccattcgttgattcggcgtatcagaaatcta 30902016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 92 - 255
Target Start/End: Complemental strand, 9886540 - 9886377
Alignment:
Q  92 agtttgtgatgctctgcatgcaaaaatgtggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattca 191  Q
    ||||||||||| | || ||||  ||||||| ||| ||||||| ||||| |||||||| || | ||||||| |||||||| |  || || ||||||||       
T  9886540 agtttgtgatgttttgtatgctgaaatgtgaggtctgtatttcggtttagagctagcttgtcatgatggaatttcacatctttgtgtggaaagtgatcat 9886441  T
Q  192 aaattgtttattgacatggttacaaataattgcaagactagttgaacgaccacttcgttgattc 255  Q
     ||||||| ||||||||||||| | ||||||||||||||| | | |||||| || |||||||||    
T  9886440 gaattgttgattgacatggttaaacataattgcaagactaatgggacgacccctccgttgattc 9886377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 19552800 - 19552755
Alignment:
Q  181 aaagtgattcaaaattgtttattgacatggttacaaataattgcaa 226  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||    
T  19552800 aaagtgattcaaaattagttattgacatggttacaaataattgcaa 19552755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 7797868 - 7797915
Alignment:
Q  181 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 228  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  7797868 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 7797915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 8055189 - 8055142
Alignment:
Q  181 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 228  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  8055189 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 8055142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 28705316 - 28705363
Alignment:
Q  181 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 228  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  28705316 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 28705363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 46019233 - 46019186
Alignment:
Q  181 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 228  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  46019233 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 46019186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 46077336 - 46077383
Alignment:
Q  181 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 228  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||    
T  46077336 aaagtgattcaaaattgtttattgtcatgataacaaataattgcaaga 46077383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 49572869 - 49572822
Alignment:
Q  181 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 228  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  49572869 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 49572822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 33695984 - 33695937
Alignment:
Q  181 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 228  Q
    |||||||||||||| || ||||||||||||| ||||| ||||||||||    
T  33695984 aaagtgattcaaaaatgcttattgacatggtaacaaaaaattgcaaga 33695937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 29515404 - 29515112
Alignment:
Q  13 atggacatcatgtggggtgtggcggtcttcttcgggatactaatgacaaatggctcaaataatttgtgcgcaaaattgaagtttgtgatgctctgcatgc 112  Q
    ||||| ||||||||||||| || |||||||| |  || ||||||| ||||| |||||||  ||||||| |||| |||| |||||| ||||||||||||||    
T  29515404 atggaaatcatgtggggtgcggtggtcttctcctagacactaatggcaaattgctcaaaggatttgtgtgcaagattggagtttgcgatgctctgcatgc 29515305  T
Q  113 aaaaatgtggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggtt 212  Q
    | |||||||||||   |||| | | ||||||||||| |||||  |||||||||||||| |  || || || | |||||||||||| |||||||||| |||    
T  29515304 agaaatgtggggt---tattcgaggttggagctagcttgacggaatggagtttcacatctatgtgtggaaggcgattcaaaattgcttattgacatagtt 29515208  T
Q  213 acaaataattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatctatt-aaccgtagttgacactttgaggttcatcatact 307  Q
    | |||||| |||| ||||| | | |||| | |||||||||| | |||||||| |||||| ||  |||||||||| ||| ||||  |||||||||||    
T  29515207 agaaataactgcaggactaatgggacgatcccttcgttgatgcgacgtatcagaaatcttttggaccgtagttggcacattgaaattcatcatact 29515112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 11596934 - 11596891
Alignment:
Q  181 aaagtgattcaaaattgtttattgacatggttacaaataattgc 224  Q
    ||||||||||||||||| |||||||||||| |||||||||||||    
T  11596934 aaagtgattcaaaattgcttattgacatggatacaaataattgc 11596891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 24785153 - 24785200
Alignment:
Q  181 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 228  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  24785153 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 24785200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 35195839 - 35195792
Alignment:
Q  181 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 228  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  35195839 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 35195792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 6262016 - 6262124
Alignment:
Q  40 ttcttcgggatactaatgacaaatggctcaaataatttgtgcgcaaaattgaagtttgtgatgctctgcatgcaaaaatgtggggtgtgtatttgggttt 139  Q
    ||||||| ||||||||||||||||| |||||   |||||||||||| |||| |||| ||||||||||||||||| ||| |||| ||  ||||||||||||    
T  6262016 ttcttcgagatactaatgacaaatgactcaagggatttgtgcgcaagattggagttcgtgatgctctgcatgcagaaacgtggtgttggtatttgggttt 6262115  T
Q  140 ggagctagc 148  Q
    |||||||||    
T  6262116 ggagctagc 6262124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 6262130 - 6262254
Alignment:
Q  184 gtgattcaaaattgtttattgacatggttacaaataattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatctatt-aaccgtag 282  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||| | | |||||| ||| |||||||| || ||||| |||||||||  |||||||    
T  6262130 gtgattcaaaactgcttattgacatggtttcaaataattgcaagactaatggtacgaccccttggttgattcgacatatcagaaatctattcgaccgtag 6262229  T
Q  283 ttgacactttgaggttcatcatact 307  Q
    ||| ||| |||||||| ||||||||    
T  6262230 ttggcacgttgaggtttatcatact 6262254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 332
Target Start/End: Complemental strand, 20679305 - 20679159
Alignment:
Q  187 attcaaaattgtttattgacatggttacaaataattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatctatta-accgtagttg 285  Q
    ||||||||||| | ||| |||||||||||||||||||||||| ||   | |||| | ||| ||||||||  |||||||  |||||| || | ||||||||    
T  20679305 attcaaaattgct-attaacatggttacaaataattgcaagattaacgggacgatccctttgttgattcggcgtatcaggaatctactagatcgtagttg 20679207  T
Q  286 acactttgaggttcatcatactcagcgataagacaata-atagaagtg 332  Q
     ||| ||||||||||| |||||  |||| ||| ||||| |||||||||    
T  20679206 gcacgttgaggttcattatacttggcgagaaggcaatatatagaagtg 20679159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 109138 - 109091
Alignment:
Q  181 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 228  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  109138 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 109091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 54908348 - 54908301
Alignment:
Q  181 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 228  Q
    ||||||||||||||||| ||||||| ||| | ||||||||||||||||    
T  54908348 aaagtgattcaaaattgcttattgatatgataacaaataattgcaaga 54908301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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