View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9014_low_5 (Length: 305)
Name: NF9014_low_5
Description: NF9014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9014_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 30 - 300
Target Start/End: Original strand, 1006501 - 1006770
Alignment:
| Q |
30 |
tggggtttaggagggtcacgaaagctgttagggtttaattattattctttagctagacttattaacgtggttgtcccgaattatgcaggaaatggagcca |
129 |
Q |
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| T |
1006501 |
tggggtttag-agggtcgcgaaagctgttagggtttaattattattctttagctagacttattaacgtggttgtcccgaattatgcaggaaatggagcca |
1006599 |
T |
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| Q |
130 |
tgcactttgagagttacttgcaaaggatggtaagaatggcagcaacggaccaagccgtcttagagtattataatacttcattggctgaacgtatgaaagc |
229 |
Q |
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| T |
1006600 |
tgcactttgagagttacttgcaaaggatggtaagaatggcagcaacggaccaagccgtcttagagtattataatacttcattggctgaacgtatgaaagc |
1006699 |
T |
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| Q |
230 |
acttgtaaaagagtttacaagaattggagtcgaggactgtgagaaattcctttatgggggcaacacgaaac |
300 |
Q |
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| T |
1006700 |
acttgtaaaagagtttacaagaattggagtcgaggactgtgagaaattcctttatgggggcaacatgaaac |
1006770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 1451611 - 1451672
Alignment:
| Q |
197 |
ttataatacttcattggctgaacgtatgaaagcacttgtaaaagagtttacaagaattggag |
258 |
Q |
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| T |
1451611 |
ttataatagttcattggctgaacgtatgaaagcgattgtcaaagagtttataagaattggag |
1451672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 191 - 286
Target Start/End: Original strand, 52474802 - 52474897
Alignment:
| Q |
191 |
agagtattataatacttcattggctgaacgtatgaaagcacttgtaaaagagtttacaagaattggagtcgaggactgtgagaaattcctttatgg |
286 |
Q |
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| T |
52474802 |
agagtgttataatagtttattggctgaacgtttgcaagcgcttgtcaaagagtttataagatttggagctaaggagtgtgagaaattcctttatgg |
52474897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 38792017 - 38791958
Alignment:
| Q |
221 |
tatgaaagcacttgtaaaagagtttacaagaattggagtcgaggactgtgagaaattcct |
280 |
Q |
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| T |
38792017 |
tatggaagcacttgtcaaagagtttataagaattggagctaagaactgtgagaaattcct |
38791958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 42038472 - 42038439
Alignment:
| Q |
1 |
tcaggatcttggttgctttcgtgtctttttgggg |
34 |
Q |
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| T |
42038472 |
tcaggatcttggttgcttttgtgtctttttgggg |
42038439 |
T |
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