View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9015_high_17 (Length: 299)
Name: NF9015_high_17
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9015_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 92 - 283
Target Start/End: Original strand, 1256569 - 1256761
Alignment:
| Q |
92 |
tcaatttacatttttccctccctaattccaccattacaagcctatatctaaataaaaactacaagcccctatttcagtttctacaacttttgttaattag |
191 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
1256569 |
tcaatttacacttttccctccctaattccaccattacaagcctatatctaaataaaaactacaagcccctgtttcagtttctacaacttttgtcaattag |
1256668 |
T |
|
| Q |
192 |
gaaaagccgaaacataatcataaaatgcagtaacnnnnnnntagaaactaatgcccttgtatag-aattttgtaacacctcctataattaact |
283 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
1256669 |
gaaaagccgaaacataatcataaaatgcagtaacaaaaaaatagaaactaatgtccttgtatagaaattttgtaacacctcctataattaact |
1256761 |
T |
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