View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9015_high_20 (Length: 280)
Name: NF9015_high_20
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9015_high_20 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 23 - 280
Target Start/End: Complemental strand, 34614441 - 34614184
Alignment:
| Q |
23 |
tatagaatttaattaaaatttgtattgattccacacaatcacttgagtttcataacatgtgggatatatttgaatttttaccaataaaaacatatattga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34614441 |
tatagaatttaattaaaatttgtattgattccacacaatcacttgagtttcataacatgtgggatatatttgaatttttaccaataaaaacatatattga |
34614342 |
T |
|
| Q |
123 |
gtttataagtcttagctaaattgtgaacatgtgtgaattcgtaaaaccaccttttgttgaattgttgtcacatggaagtaaaacatgttagcatgtaatt |
222 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34614341 |
gtctataagtcttagctaaattgtgaacatgtgtgaattcgtaaagccaccttttgttgaattgttgtcacatggcagtaaaacatgttagcatgtaatt |
34614242 |
T |
|
| Q |
223 |
tctatgtttacataagccaccttatggttttgtaacttataaaaagagctcatttagt |
280 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34614241 |
tctatgtttacataagccaccttacggttttgtaacttataaaaagagctcatttagt |
34614184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 5199164 - 5199102
Alignment:
| Q |
173 |
cttttgttgaattgttgtcacatggaagtaaaacatgttagcatgtaatttctatgtttacat |
235 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
5199164 |
cttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacat |
5199102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 35964861 - 35964827
Alignment:
| Q |
243 |
cttatggttttgtaacttataaaaagagctcattt |
277 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
35964861 |
cttacggttttgtaacttataaaaagagctcattt |
35964827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 27879236 - 27879174
Alignment:
| Q |
173 |
cttttgttgaattgttgtcacatggaagtaaaacatgttagcatgtaatttctatgtttacat |
235 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
27879236 |
cttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacat |
27879174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 30946003 - 30945941
Alignment:
| Q |
173 |
cttttgttgaattgttgtcacatggaagtaaaacatgttagcatgtaatttctatgtttacat |
235 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
30946003 |
cttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacat |
30945941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 30950709 - 30950647
Alignment:
| Q |
173 |
cttttgttgaattgttgtcacatggaagtaaaacatgttagcatgtaatttctatgtttacat |
235 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
30950709 |
cttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacat |
30950647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 48697641 - 48697579
Alignment:
| Q |
173 |
cttttgttgaattgttgtcacatggaagtaaaacatgttagcatgtaatttctatgtttacat |
235 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
48697641 |
cttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacat |
48697579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 48702330 - 48702268
Alignment:
| Q |
173 |
cttttgttgaattgttgtcacatggaagtaaaacatgttagcatgtaatttctatgtttacat |
235 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
48702330 |
cttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacat |
48702268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 2817760 - 2817698
Alignment:
| Q |
173 |
cttttgttgaattgttgtcacatggaagtaaaacatgttagcatgtaatttctatgtttacat |
235 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| ||||| |||||||||||||||||| |||| |
|
|
| T |
2817760 |
cttttgttgaattgttatcacatggcagtaaaatatgttggcatgtaatttctatgttcacat |
2817698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 29585799 - 29585737
Alignment:
| Q |
173 |
cttttgttgaattgttgtcacatggaagtaaaacatgttagcatgtaatttctatgtttacat |
235 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||| ||||||| ||| |||||| |||| |
|
|
| T |
29585799 |
cttttgttgaattgttatcacatggcagtaaaacatgttggcatgtagtttttatgttcacat |
29585737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University