View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9015_high_5 (Length: 461)

Name: NF9015_high_5
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9015_high_5
NF9015_high_5
[»] chr5 (5 HSPs)
chr5 (123-461)||(2997705-2998043)
chr5 (188-461)||(2997977-2998249)
chr5 (201-461)||(2998196-2998456)
chr5 (188-448)||(2998390-2998650)
chr5 (46-96)||(2997642-2997692)
[»] chr2 (8 HSPs)
chr2 (150-461)||(32716428-32716739)
chr2 (188-461)||(32716673-32716946)
chr2 (152-461)||(32717051-32717360)
chr2 (188-461)||(32716880-32717153)
chr2 (153-448)||(32717259-32717554)
chr2 (150-302)||(32714014-32714166)
chr2 (401-461)||(32714058-32714118)
chr2 (104-142)||(25842120-25842158)
[»] chr6 (5 HSPs)
chr6 (188-461)||(14904774-14905047)
chr6 (233-459)||(14905397-14905623)
chr6 (152-461)||(14904981-14905290)
chr6 (194-457)||(14905192-14905455)
chr6 (155-271)||(14904757-14904873)
[»] chr8 (18 HSPs)
chr8 (150-273)||(34916661-34916784)
chr8 (155-272)||(34534099-34534216)
chr8 (359-461)||(34916680-34916782)
chr8 (362-461)||(34534117-34534216)
chr8 (359-461)||(38454146-38454248)
chr8 (150-256)||(38454144-38454250)
chr8 (164-273)||(34544941-34545050)
chr8 (304-461)||(34548885-34549042)
chr8 (401-461)||(34544960-34545020)
chr8 (401-461)||(39848031-39848091)
chr8 (150-241)||(38453535-38453626)
chr8 (401-461)||(34549092-34549152)
chr8 (155-250)||(39848853-39848948)
chr8 (160-250)||(38632290-38632380)
chr8 (362-460)||(39848853-39848951)
chr8 (193-274)||(39848030-39848111)
chr8 (211-275)||(34548864-34548928)
chr8 (304-336)||(38632427-38632459)
[»] chr4 (2 HSPs)
chr4 (402-461)||(44474135-44474194)
chr4 (150-231)||(44474714-44474795)
[»] chr3 (2 HSPs)
chr3 (150-247)||(7046911-7047008)
chr3 (401-461)||(7046904-7046964)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 123 - 461
Target Start/End: Original strand, 2997705 - 2998043
Alignment:
Q  123 caattttacccctttatttgtatcttccaaatggggatgtctacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaag 222  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||    
T  2997705 caattttacccctttatttgtatcttccaaatgggcatgtctacattggtaattttaagggaaaattttttcatggcaagggaaagtacacatggtcaag 2997804  T
Q  223 tggaacaatctatgagggtgattgggttaatggaaaaaggactgggaaaggaccggtcataaatccgtcaagagcaagttttgagggtgaattctttagg 322  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2997805 tggaacaatctatgagggtgattgggttaatgaaaaaaggactgggaaaggaccggtcataaatccgtcaagagcaagttttgagggtgaattctttagg 2997904  T
Q  323 aattctcgtcatggtcatggcactcttacaaaatccaatggggatgtctacattggtaacttcgaaaatgatcttttccatggcaagggaaagtacacat 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2997905 aattctcgtcatggtcatggcactcttacaaaatccaatggggatgtcttcattggtaactttgaaaatgatcttttccatggcaagggaaagtacacat 2998004  T
Q  423 ggtcaagtggaacaatatatgagggtgattgggttgatg 461  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2998005 ggtcaagtggaacaatatatgagggtgattgggttgatg 2998043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 188 - 461
Target Start/End: Original strand, 2997977 - 2998249
Alignment:
Q  188 ctttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggttaatggaaaaaggactgggaaaggaccggtcataaatc 287  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||| | |||| ||||||||||   | ||| |||    
T  2997977 cttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttgatggaagacggacagggaaaggacgaataatatatc 2998076  T
Q  288 cgtcaagagcaagttttgagggtgaattctttaggaattctcgtcatggtcatggcactcttacaaaatccaatggggatgtctacattggtaacttcga 387  Q
    | | || | ||| |||||||||||||||||  || ||||| ||| ||||| | ||||| |||| ||||||  |||||||| |||||||||||||||| ||    
T  2998077 cataaaaaacaatttttgagggtgaattctcgagaaattcccgtaatggttacggcacccttaaaaaatctgatggggatatctacattggtaactttga 2998176  T
Q  388 aaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttgatg 461  Q
     ||  || ||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  2998177 gaacaatattttccatggc-agggaaagcacacatggtcaaatggaacaatatatgagggtgattgggttgatg 2998249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 201 - 461
Target Start/End: Original strand, 2998196 - 2998456
Alignment:
Q  201 agggaaaatacacatggtcaagtggaacaatctatgagggtgattgggttaatggaaaaaggactgggaaaggaccggtcataaatccgtcaagagcaag 300  Q
    |||||||  |||||||||||| ||||||||| |||||||||||||||||| ||| | ||||||| |||||||||| | ||||| |||| ||| || ||||    
T  2998196 agggaaagcacacatggtcaaatggaacaatatatgagggtgattgggttgatgaacaaaggacagggaaaggacggatcatatatccatcaggaacaag 2998295  T
Q  301 ttttgagggtgaattctttaggaattctcgtcatggtcatggcactcttacaaaatccaatggggatgtctacattggtaacttcgaaaatgatcttttc 400  Q
    |||||||||||||||||  | |||||| |||||| |||| | ||| || ||||||||| |||||||| ||||| ||||||||||||| || |||||||||    
T  2998296 ttttgagggtgaattctccatgaattcccgtcatagtcacgacaccctgacaaaatccgatggggatatctacgttggtaacttcgataacgatcttttc 2998395  T
Q  401 catggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttgatg 461  Q
    |||||||| ||||||||||  ||||||| ||||||||||||  |||||| |||| ||||||    
T  2998396 catggcaacggaaagtacatgtggtcaaatggaacaatatacaagggtggttggtttgatg 2998456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 188 - 448
Target Start/End: Original strand, 2998390 - 2998650
Alignment:
Q  188 ctttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggttaatggaaaaaggactgggaaaggaccggtcataaatc 287  Q
    ||||| |||||||| ||||| ||||  ||||||| ||||||||| ||  |||||| |||| || |||||| |||||| |||||||| | | ||||| ||     
T  2998390 cttttccatggcaacggaaagtacatgtggtcaaatggaacaatatacaagggtggttggtttgatggaagaaggacagggaaaggtcggatcatatatt 2998489  T
Q  288 cgtcaagagcaagttttgagggtgaattctttaggaattctcgtcatggtcatggcactcttacaaaatccaatggggatgtctacattggtaacttcga 387  Q
    | ||| || ||| |||||||||||||||||  | ||| || ||||||||||  ||||| ||||||||||||||||||||| ||||| |||||||||||||    
T  2998490 catcaggatcaatttttgagggtgaattctccaagaactcccgtcatggtcgcggcacccttacaaaatccaatggggatatctacgttggtaacttcga 2998589  T
Q  388 aaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggt 448  Q
     |||||| |||| ||||||||||||||||||||||| | || | |||||||||||||||||    
T  2998590 gaatgatatttttcatggcaagggaaagtacacatgtttaaatagaacaatatatgagggt 2998650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 2997642 - 2997692
Alignment:
Q  46 ttaatgaaagattttttctgttttatttataccaatatatgaaggaattaa 96  Q
    |||||||||  ||||||| |||||||||||||||||||| |||||||||||    
T  2997642 ttaatgaaattttttttccgttttatttataccaatatacgaaggaattaa 2997692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 150 - 461
Target Start/End: Original strand, 32716428 - 32716739
Alignment:
Q  150 caaatggggatgtctacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggt 249  Q
    |||||||||||||||||||||||  | |||||||||||| |   |||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  32716428 caaatggggatgtctacattggttttgtcaagggaaaacgtaagcatggcaagggaaagtacacatggtcaaatggaacaatatatgagggtgattgggt 32716527  T
Q  250 taatggaaaaaggactgggaaaggaccggtcataaatccgtcaagagcaagttttgagggtgaattctttaggaattctcgtcatggtcatggcactctt 349  Q
    | ||||||||||||| |||||||| | | ||||| |||| ||| ||||||||||||||||| |||||||||||||||| ||||||||||  |||||||||    
T  32716528 tgatggaaaaaggacagggaaagggcggatcatatatccatcaggagcaagttttgagggtcaattctttaggaattcccgtcatggtcgcggcactctt 32716627  T
Q  350 acaaaatccaatggggatgtctacattggtaacttcgaaaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtg 449  Q
    | ||||||| |||||| | ||||| ||||||||||||| | |||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  32716628 aaaaaatccgatgggggtatctacgttggtaacttcgagagtgatcttttccatggcaagggaaagtacacgtggttaaatggaacaatatatgagggtg 32716727  T
Q  450 attgggttgatg 461  Q
    ||||||||||||    
T  32716728 attgggttgatg 32716739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 188 - 461
Target Start/End: Original strand, 32716673 - 32716946
Alignment:
Q  188 ctttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggttaatggaaaaaggactgggaaaggaccggtcataaatc 287  Q
    ||||| |||||||||||||| ||||| |||| || ||||||||| |||||||||||||||||| ||||||||||||| |||||||| | | ||||| |||    
T  32716673 cttttccatggcaagggaaagtacacgtggttaaatggaacaatatatgagggtgattgggttgatggaaaaaggacagggaaagggcggatcatatatc 32716772  T
Q  288 cgtcaagagcaagttttgagggtgaattctttaggaattctcgtcatggtcatggcactcttacaaaatccaatggggatgtctacattggtaacttcga 387  Q
    | ||| ||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||| |||||| | ||||| |||||||||||||    
T  32716773 catcaggagcaagttttgagggtcaattctttaggaattcccgtcatggtcacggcactcttaaaaaatccgatgggggtatctacgttggtaacttcga 32716872  T
Q  388 aaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttgatg 461  Q
     | |||||||||||||||||| ||||||||||||||||||  |||||||||||| || ||||||||||||||||    
T  32716873 gagtgatcttttccatggcaaaggaaagtacacatggtcacatggaacaatatacgatggtgattgggttgatg 32716946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 152 - 461
Target Start/End: Original strand, 32717051 - 32717360
Alignment:
Q  152 aatggggatgtctacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggtta 251  Q
    |||||| |||||||||||||||| |||||| |  | |||||  ||||||||||||| ||||||||| ||  ||||  ||| || |||||||||||||||     
T  32717051 aatgggcatgtctacattggtaacttcaagagtgatcttttcaatggcaagggaaagtacacatggccagatggagaaatatacgagggtgattgggttg 32717150  T
Q  252 atggaaaaaggactgggaaaggaccggtcataaatccgtcaagagcaagttttgagggtgaattctttaggaattctcgtcatggtcatggcactcttac 351  Q
    |||||| || |||||||||||| | | ||||| |||| ||| || ||| |||||||||||||||||   ||||||| ||||||||||| ||||| ||||     
T  32717151 atggaagaatgactgggaaaggtcagatcatatatccatcaggatcaacttttgagggtgaattctccgggaattcccgtcatggtcacggcacccttaa 32717250  T
Q  352 aaaatccaatggggatgtctacattggtaacttcgaaaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgat 451  Q
    ||||||  |||||||| ||||||||||||||||||| | |||||||| ||||||||| |||||||||||||||| |  |||||||||||| |||||||||    
T  32717251 aaaatctgatggggatatctacattggtaacttcgagagtgatctttaccatggcaaaggaaagtacacatggttagatggaacaatatacgagggtgat 32717350  T
Q  452 tgggttgatg 461  Q
    ||||||||||    
T  32717351 tgggttgatg 32717360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 188 - 461
Target Start/End: Original strand, 32716880 - 32717153
Alignment:
Q  188 ctttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggttaatggaaaaaggactgggaaaggaccggtcataaatc 287  Q
    ||||| |||||||| ||||| ||||||||||||  ||||||||| || || |||||||||||| |||||| |||||| |||||||| |   | ||| |||    
T  32716880 cttttccatggcaaaggaaagtacacatggtcacatggaacaatatacgatggtgattgggttgatggaagaaggacagggaaagggcaaatgatatatc 32716979  T
Q  288 cgtcaagagcaagttttgagggtgaattctttaggaattctcgtcatggtcatggcactcttacaaaatccaatggggatgtctacattggtaacttcga 387  Q
      ||| || |||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||| | |||||||||| |||||||||||||||||||| |    
T  32716980 tatcaggaacaagttttgagggtcaattctttaggaattcccgtcatggtcaaggcacccttaccatatccaatgggcatgtctacattggtaacttcaa 32717079  T
Q  388 aaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttgatg 461  Q
     | |||||||||| ||||||||||||||||||||||| ||  ||||  |||||| |||||||||||||||||||    
T  32717080 gagtgatcttttcaatggcaagggaaagtacacatggccagatggagaaatatacgagggtgattgggttgatg 32717153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 153 - 448
Target Start/End: Original strand, 32717259 - 32717554
Alignment:
Q  153 atggggatgtctacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggttaa 252  Q
    |||||||| ||||||||||||| ||| || |  | ||||  |||||||| ||||| |||||||||| |  ||||||||| || ||||||||||||||| |    
T  32717259 atggggatatctacattggtaacttcgagagtgatctttaccatggcaaaggaaagtacacatggttagatggaacaatatacgagggtgattgggttga 32717358  T
Q  253 tggaaaaaggactgggaaaggaccggtcataaatccgtcaagagcaagttttgagggtgaattctttaggaattctcgtcatggtcatggcactcttaca 352  Q
    ||||| |||||| |||||||||| | | ||| |||| ||| |||||||||||||||||||||||| |||||||||   ||||||||| || |||| ||||    
T  32717359 tggaagaaggacagggaaaggacggataatatatccatcaggagcaagttttgagggtgaattctctaggaattcctttcatggtcacggaactcataca 32717458  T
Q  353 aaatccaatggggatgtctacattggtaacttcgaaaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggt 448  Q
    ||||| || ||||| ||||||| || ||||  ||| | | |||||||||||    |||||||||| || ||||||| |||||||||||||||||||    
T  32717459 aaatcaaacggggaagtctacagtgataacaccgagagtaatcttttccattcgcagggaaagtaaacttggtcaattggaacaatatatgagggt 32717554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 150 - 302
Target Start/End: Original strand, 32714014 - 32714166
Alignment:
Q  150 caaatggggatgtctacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggt 249  Q
    |||||||||||||||||||||||  | |||||||||||| |   |||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  32714014 caaatggggatgtctacattggttttgtcaagggaaaacgtaagcatggcaagggaaagtacacatggtcaaatggaacaatatatgagggtgattgggt 32714113  T
Q  250 taatggaaaaaggactgggaaaggaccggtcataaatccgtcaagagcaagtt 302  Q
    | ||||||||||||| |||||||| | | ||||| |||| ||| |||||||||    
T  32714114 tgatggaaaaaggacagggaaagggcggatcatatatccatcaggagcaagtt 32714166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 401 - 461
Target Start/End: Original strand, 32714058 - 32714118
Alignment:
Q  401 catggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttgatg 461  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32714058 catggcaagggaaagtacacatggtcaaatggaacaatatatgagggtgattgggttgatg 32714118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 25842120 - 25842158
Alignment:
Q  104 gggctcaatttttcctttccaattttacccctttatttg 142  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  25842120 gggctgaatttttcctttccaattttaccccttcatttg 25842158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 6e-72; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 188 - 461
Target Start/End: Complemental strand, 14905047 - 14904774
Alignment:
Q  188 ctttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggttaatggaaaaaggactgggaaaggaccggtcataaatc 287  Q
    ||||| |||||||||||||| |||||||||||| |||||  ||| ||||||||||| |||||| ||||||||| ||| |||||||| | | | |||  ||    
T  14905047 cttttccatggcaagggaaagtacacatggtcaggtggacaaatatatgagggtgactgggttgatggaaaaaagacagggaaagggcggatgatatttc 14904948  T
Q  288 cgtcaagagcaagttttgagggtgaattctttaggaattctcgtcatggtcatggcactcttacaaaatccaatggggatgtctacattggtaacttcga 387  Q
    | ||| ||| |||||||||||||||||||||||   |||||||||||||||| | ||| |||| ||||||||| |||||||||||||||||||||||| |    
T  14904947 catcaggagaaagttttgagggtgaattctttaaagattctcgtcatggtcacgacacccttataaaatccaacggggatgtctacattggtaacttcaa 14904848  T
Q  388 aaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttgatg 461  Q
     |||||||||||||||||||| ||||| ||||||||||| | ||||| ||||||||||||||||||||||||||    
T  14904847 gaatgatcttttccatggcaaaggaaaatacacatggtcgaatggaaaaatatatgagggtgattgggttgatg 14904774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 233 - 459
Target Start/End: Complemental strand, 14905623 - 14905397
Alignment:
Q  233 tatgagggtgattgggttaatggaaaaaggactgggaaaggaccggtcataaatccgtcaagagcaagttttgagggtgaattctttaggaattctcgtc 332  Q
    ||||||||||| |||||| | ||| |||||||||||||||| | | | ||| |||| ||| |||||||||||||||||||||||||||||||||| ||||    
T  14905623 tatgagggtgactgggttgacggagaaaggactgggaaagggcggatgatatatccatcaggagcaagttttgagggtgaattctttaggaattcccgtc 14905524  T
Q  333 atggtcatggcactcttacaaaatccaatggggatgtctacattggtaacttcgaaaatgatcttttccatggcaagggaaagtacacatggtcaagtgg 432  Q
    ||||||| ||||| |||||||||||||| ||| || ||||||||||||||||| | | || |  |||||||||||||||||||||||||||||||  |||    
T  14905523 atggtcaaggcacccttacaaaatccaacgggaatctctacattggtaacttcaagagtggttctttccatggcaagggaaagtacacatggtcagatgg 14905424  T
Q  433 aacaatatatgagggtgattgggttga 459  Q
    |   |||||||||||||| ||||||||    
T  14905423 agagatatatgagggtgactgggttga 14905397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 152 - 461
Target Start/End: Complemental strand, 14905290 - 14904981
Alignment:
Q  152 aatggggatgtctacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggtta 251  Q
    ||||||||||||||| ||||||| ||| ||   || ||||| |||||||||||||| | ||||||||||   |||  ||| ||||||||||||||||||     
T  14905290 aatggggatgtctacgttggtaacttcgagaataatcttttccatggcaagggaaagtgcacatggtcagagggagaaatatatgagggtgattgggttt 14905191  T
Q  252 atggaaaaaggactgggaaaggaccggtcataaatccgtcaagagcaagttttgagggtgaattctttaggaattctcgtcatggtcatggcactcttac 351  Q
    ||||||  ||||| ||||||||||   | ||   ||| |||  ||||||||||||||||| |||||  | |||     ||||||| || | ||| |||||    
T  14905190 atggaagcaggacagggaaaggacgaatgatctttccatcagaagcaagttttgagggtggattctcaatgaacatcagtcatggacacgacacccttac 14905091  T
Q  352 aaaatccaatggggatgtctacattggtaacttcgaaaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgat 451  Q
    || |||||| |||||| |||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||| |||||  |||||||||||||||     
T  14905090 aagatccaacggggatctctatattggtaactttgagaatggtcttttccatggcaagggaaagtacacatggtcaggtggacaaatatatgagggtgac 14904991  T
Q  452 tgggttgatg 461  Q
    ||||||||||    
T  14904990 tgggttgatg 14904981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 194 - 457
Target Start/End: Complemental strand, 14905455 - 14905192
Alignment:
Q  194 catggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggttaatggaaaaaggactgggaaaggaccggtcataaatccgtcaa 293  Q
    |||||||||||||| ||||||||||||  ||||   || ||||||||||| |||||| | ||||||| ||| || ||||| | | || || |||| |||     
T  14905455 catggcaagggaaagtacacatggtcagatggagagatatatgagggtgactgggttgacggaaaaaagacaggtaaagggcggatcttatatccatcag 14905356  T
Q  294 gagcaagttttgagggtgaattctttaggaattctcgtcatggtcatggcactcttacaaaatccaatggggatgtctacattggtaacttcgaaaatga 393  Q
    |||||| |||||| ||||| |     |   ||  | |||||||||| |||||  ||||| | |||||||||||||||||| ||||||||||||| ||| |    
T  14905355 gagcaaattttgatggtgactgggagaatgatattggtcatggtcacggcacctttacacattccaatggggatgtctacgttggtaacttcgagaataa 14905256  T
Q  394 tcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggtt 457  Q
    ||||||||||||||||||||||| ||||||||||   |||  ||||||||||||||||||||||    
T  14905255 tcttttccatggcaagggaaagtgcacatggtcagagggagaaatatatgagggtgattgggtt 14905192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 155 - 271
Target Start/End: Complemental strand, 14904873 - 14904757
Alignment:
Q  155 ggggatgtctacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggttaatg 254  Q
    |||||||||||||||||||| ||||||    | ||||| |||||||| ||||||||||||||||| | ||||| ||| |||||||||||||||||| |||    
T  14904873 ggggatgtctacattggtaacttcaagaatgatcttttccatggcaaaggaaaatacacatggtcgaatggaaaaatatatgagggtgattgggttgatg 14904774  T
Q  255 gaaaaaggactgggaaa 271  Q
    ||| |||||| ||||||    
T  14904773 gaagaaggacagggaaa 14904757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 150 - 273
Target Start/End: Complemental strand, 34916784 - 34916661
Alignment:
Q  150 caaatggggatgtctacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggt 249  Q
    ||||||||||||||||||||||||| ||||||||  ||||| | ||||||| |||||| ||||||||| ||| ||||||||| || |||||||| |||||    
T  34916784 caaatggggatgtctacattggtaaattcaagggtgaacttctccatggcatgggaaagtacacatggacaaatggaacaatatacgagggtgactgggt 34916685  T
Q  250 taatggaaaaaggactgggaaagg 273  Q
    | ||||||||  ||| ||||||||    
T  34916684 tgatggaaaagtgacagggaaagg 34916661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 34534216 - 34534099
Alignment:
Q  155 ggggatgtctacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggttaatg 254  Q
    |||||||||||||||||||| ||||||||  |||||| ||||||||| || || ||||||||||||  ||||||||| |||||||| ||||||||| |||    
T  34534216 ggggatgtctacattggtaacttcaagggtgaactttgtcatggcaacgggaagtacacatggtcagatggaacaatatatgagggcgattgggttgatg 34534117  T
Q  255 gaaaaaggactgggaaag 272  Q
    || ||| ||| |||||||    
T  34534116 gacaaatgacagggaaag 34534099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 461
Target Start/End: Complemental strand, 34916782 - 34916680
Alignment:
Q  359 aatggggatgtctacattggtaacttcgaaaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttg 458  Q
    ||||||||||||||||||||||| ||| |   ||| ||| ||||||||| |||||||||||||||| ||| |||||||||||| |||||||| |||||||    
T  34916782 aatggggatgtctacattggtaaattcaagggtgaacttctccatggcatgggaaagtacacatggacaaatggaacaatatacgagggtgactgggttg 34916683  T
Q  459 atg 461  Q
    |||    
T  34916682 atg 34916680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 362 - 461
Target Start/End: Complemental strand, 34534216 - 34534117
Alignment:
Q  362 ggggatgtctacattggtaacttcgaaaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttgatg 461  Q
    |||||||||||||||||||||||| |   ||| ||||  |||||||| || |||||||||||||||  |||||||||||||||||| |||||||||||||    
T  34534216 ggggatgtctacattggtaacttcaagggtgaactttgtcatggcaacgggaagtacacatggtcagatggaacaatatatgagggcgattgggttgatg 34534117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 461
Target Start/End: Complemental strand, 38454248 - 38454146
Alignment:
Q  359 aatggggatgtctacattggtaacttcgaaaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttg 458  Q
    ||||||||||||||| ||||||||||| |  |||| ||||| |||||||| ||||||| ||||| |||| ||||| || ||||||||||||||||| |||    
T  38454248 aatggggatgtctacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatgtggatcagtatatgagggtgattggattg 38454149  T
Q  459 atg 461  Q
    |||    
T  38454148 atg 38454146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 38454250 - 38454144
Alignment:
Q  150 caaatggggatgtctacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggt 249  Q
    ||||||||||||||||| ||||||| |||||||   |||||||||||||||| ||||| | ||||| |||| ||||| || | ||||||||||||||| |    
T  38454250 caaatggggatgtctacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatgtggatcagtatatgagggtgattggat 38454151  T
Q  250 taatgga 256  Q
    | |||||    
T  38454150 tgatgga 38454144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 273
Target Start/End: Complemental strand, 34545050 - 34544941
Alignment:
Q  164 tacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggttaatggaaaaagga 263  Q
    ||||||||||| |||| |||  || ||  ||||||||  ||||| ||||||||| ||| ||||||||| || |||||||| |||||| ||||||||| ||    
T  34545050 tacattggtaaattcaggggtgaaattcctcatggcatcggaaagtacacatggacaaatggaacaatatacgagggtgactgggttgatggaaaaatga 34544951  T
Q  264 ctgggaaagg 273  Q
    | ||||||||    
T  34544950 cagggaaagg 34544941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 461
Target Start/End: Complemental strand, 34549042 - 34548885
Alignment:
Q  304 tgagggtgaattctttaggaattctcgtcatggtcatggcactcttacaaaatccaatggggatgtctacattggtaacttcgaaaatgatcttttccat 403  Q
    |||||||||||||||| ||| ||    ||||||||||| || || ||||||||| ||||||||  ||||||||||||  ||| | ||| | ||||||| |    
T  34549042 tgagggtgaattctttgggagttgcgatcatggtcatgacattcgtacaaaatcgaatggggacatctacattggtagattcaagaataaacttttcctt 34548943  T
Q  404 ggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttgatg 461  Q
    |  ||   ||||| |||||||||||   ||||||||||||| || |||||||||||||    
T  34548942 gataacaaaaagtccacatggtcaaacagaacaatatatgaaggcgattgggttgatg 34548885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 461
Target Start/End: Complemental strand, 34545020 - 34544960
Alignment:
Q  401 catggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttgatg 461  Q
    |||||||  ||||||||||||||| ||| |||||||||||| |||||||| ||||||||||    
T  34545020 catggcatcggaaagtacacatggacaaatggaacaatatacgagggtgactgggttgatg 34544960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 461
Target Start/End: Original strand, 39848031 - 39848091
Alignment:
Q  401 catggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttgatg 461  Q
    ||||||||  |||||||||||||||||  |||| ||||||||| |||||||||||||||||    
T  39848031 catggcaaaagaaagtacacatggtcagatggatcaatatatgtgggtgattgggttgatg 39848091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 241
Target Start/End: Complemental strand, 38453626 - 38453535
Alignment:
Q  150 caaatggggatgtctacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggt 241  Q
    |||||||||||||| |||||||||| |||| | | ||||   |||||||||| |||||||||||||  |||| ||||||||| || ||||||    
T  38453626 caaatggggatgtcgacattggtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggt 38453535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 461
Target Start/End: Complemental strand, 34549152 - 34549092
Alignment:
Q  401 catggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttgatg 461  Q
    ||||| || ||||||||||||||||||| |||||||||||| |||| ||| ||||| ||||    
T  34549152 catggaaaaggaaagtacacatggtcaaatggaacaatatacgaggatgaatgggtcgatg 34549092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 39848853 - 39848948
Alignment:
Q  155 ggggatgtctacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggtt 250  Q
    ||||||||| | |||||||| |||| | | |||||| | |||| ||| ||||||||||||   |||| ||||||||| || |||||||||||||||    
T  39848853 ggggatgtcgatattggtaacttcaggagtaaacttctccatgacaatggaaaatacacacactcaaatggaacaatatacgagggtgattgggtt 39848948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 38632290 - 38632380
Alignment:
Q  160 tgtctacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggtt 250  Q
    ||||||||||||||| ||||||||  |||||  ||||||||  ||||| | || |||||||  |||| |||  ||||||||||||||||||    
T  38632290 tgtctacattggtaacttcaagggtgaacttcgtcatggcagcggaaagtgcaaatggtcagatggatcaacatatgagggtgattgggtt 38632380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 460
Target Start/End: Original strand, 39848853 - 39848951
Alignment:
Q  362 ggggatgtctacattggtaacttcgaaaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttgat 460  Q
    ||||||||| | ||||||||||||   | | | ||| |||||| ||| ||||| ||||||   |||| |||||||||||| ||||||||||||||||||    
T  39848853 ggggatgtcgatattggtaacttcaggagtaaacttctccatgacaatggaaaatacacacactcaaatggaacaatatacgagggtgattgggttgat 39848951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 39848030 - 39848111
Alignment:
Q  193 tcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgggttaatggaaaaaggactgggaaagga 274  Q
    |||||||||  |||| ||||||||||||  |||| |||| |||| ||||||||||||| ||||| | | ||| |||||||||    
T  39848030 tcatggcaaaagaaagtacacatggtcagatggatcaatatatgtgggtgattgggttgatggagataagacagggaaagga 39848111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 34548928 - 34548864
Alignment:
Q  211 cacatggtcaagtggaacaatctatgagggtgattgggttaatggaaaaaggactgggaaaggac 275  Q
    |||||||||||   ||||||| ||||| || ||||||||| ||||||||| ||| ||||||||||    
T  34548928 cacatggtcaaacagaacaatatatgaaggcgattgggttgatggaaaaatgacagggaaaggac 34548864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 336
Target Start/End: Original strand, 38632427 - 38632459
Alignment:
Q  304 tgagggtgaattctttaggaattctcgtcatgg 336  Q
    ||||||||||||||||||||||| |||||||||    
T  38632427 tgagggtgaattctttaggaattgtcgtcatgg 38632459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 402 - 461
Target Start/End: Original strand, 44474135 - 44474194
Alignment:
Q  402 atggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttgatg 461  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||  |||||||    
T  44474135 atggcaacggaaagtacacatggtcagatggatcaatatatgagggtgattttgttgatg 44474194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 44474714 - 44474795
Alignment:
Q  150 caaatggggatgtctacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaagtggaacaat 231  Q
    |||||||||||||| |||||||||| |||| | | |||||| || ||| ||| |||| ||||||||| |||| || ||||||    
T  44474714 caaatggggatgtcgacattggtaacttcaggagtaaacttctttatgacaacggaacatacacatgttcaaatgaaacaat 44474795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 7047008 - 7046911
Alignment:
Q  150 caaatggggatgtctacattggtaatttcaagggaaaactttttcatggcaagggaaaatacacatggtcaagtggaacaatctatgagggtgattgg 247  Q
    ||||||||  ||||||||||| ||| || |||||  |||||  ||||||||| ||||| ||||||||||||  |||| |||| |||||||| ||||||    
T  7047008 caaatgggagtgtctacattgataactttaaggggcaacttcatcatggcaacggaaactacacatggtcagatggatcaatatatgagggagattgg 7046911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 461
Target Start/End: Complemental strand, 7046964 - 7046904
Alignment:
Q  401 catggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttgatg 461  Q
    |||||||| ||||| ||||||||||||  |||| ||||||||||||| |||||| ||||||    
T  7046964 catggcaacggaaactacacatggtcagatggatcaatatatgagggagattggattgatg 7046904  T

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