View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9015_high_9 (Length: 401)

Name: NF9015_high_9
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9015_high_9
NF9015_high_9
[»] chr2 (8 HSPs)
chr2 (41-386)||(2329541-2329894)
chr2 (165-386)||(2349973-2350194)
chr2 (260-386)||(2326053-2326179)
chr2 (300-386)||(2292919-2293005)
chr2 (300-386)||(2309250-2309336)
chr2 (300-386)||(2320239-2320325)
chr2 (260-386)||(2302498-2302624)
chr2 (134-231)||(2325940-2326036)


Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 41 - 386
Target Start/End: Original strand, 2329541 - 2329894
Alignment:
Q  41 gatgtattatatccatccataactattaatcatatccccttcattcttattcttatcatattcattcatccactgt--------cattgatacactgtcc 132  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||        ||||||||||||||||    
T  2329541 gatgtattatatccatccataactattaatcatatcccctttattcttattcttatcatattcattcatcctctgttttattgtcattgatacactgtcc 2329640  T
Q  133 gcgtaaaaagagtaaagtagttgcatcaacacttttacgtaatggaaatatggttcatcgcacttgtttctctctgcatcatcttcctcatcagagccac 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2329641 gcgtaaaaagagtaaagtagttgcatcaacacttttacgtaatggaaacatggttcatcgcacttgtttctctctgcatcatcttcctcatcagagccac 2329740  T
Q  233 cctttcatccatttccaccaccaagaaaaccaccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatca 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2329741 cctttcatccatttccaccaccaagaaaaccaccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatca 2329840  T
Q  333 ttcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2329841 ttcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatc 2329894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 165 - 386
Target Start/End: Original strand, 2349973 - 2350194
Alignment:
Q  165 ttttacgtaatggaaatatggttcatcgcacttgtttctctctgcatcatcttcctcatcagagccaccctttcatccatttccaccaccaagaaaacca 264  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | | || ||| |  |||||||||| |||||||    
T  2349973 ttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccaccaacaaaacca 2350072  T
Q  265 ccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactct 364  Q
    ||||||||||||| || |||||||| ||||| || || |||||||| |||| |||||| ||||||||||   |||| || ||||||||| ||| ||| ||    
T  2350073 ccgcaaccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccct 2350172  T
Q  365 tcatgccaaacatggtcctatc 386  Q
     ||  ||||| |||||||||||    
T  2350173 ccacaccaaatatggtcctatc 2350194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 260 - 386
Target Start/End: Original strand, 2326053 - 2326179
Alignment:
Q  260 aaccaccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcaga 359  Q
    |||||||| | ||||||| ||  | |||||||| || || |||||||||||||| |||||||| |||||||||||  |||| |||||||||||||||| |    
T  2326053 aaccaccgtacccctccctcccagcccaccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaa 2326152  T
Q  360 actcttcatgccaaacatggtcctatc 386  Q
    ||||| |||||||||||||||||||||    
T  2326153 actctccatgccaaacatggtcctatc 2326179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 386
Target Start/End: Original strand, 2292919 - 2293005
Alignment:
Q  300 atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatc 386  Q
    |||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| |||||||||||||||||||||    
T  2292919 atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatc 2293005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 386
Target Start/End: Original strand, 2309250 - 2309336
Alignment:
Q  300 atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatc 386  Q
    |||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| |||||||||||||||||||||    
T  2309250 atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatc 2309336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 386
Target Start/End: Original strand, 2320239 - 2320325
Alignment:
Q  300 atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatc 386  Q
    |||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| |||||||||||||||||||||    
T  2320239 atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatc 2320325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 386
Target Start/End: Original strand, 2302498 - 2302624
Alignment:
Q  260 aaccaccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcaga 359  Q
    |||||||| | || |||| ||||| || ||||| || || ||| |||||| ||| || | ||| |||||| ||| | |||| |||||||||||||||| |    
T  2302498 aaccaccgtacccttccctcctggccctccacacatccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctcaaa 2302597  T
Q  360 actcttcatgccaaacatggtcctatc 386  Q
    ||||| |||||||||||||||||||||    
T  2302598 actctccatgccaaacatggtcctatc 2302624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 2325940 - 2326036
Alignment:
Q  134 cgtaaaaagagtaaagtagttgcatcaacacttttacgtaatggaaatatggttcatcgcacttgtttctctctgcatcatcttcctcatcagagcca 231  Q
    |||||||||||||||  | ||| || || |||||||||| ||||||| |||||||||||  ||  || |||| ||||||||||||||| ||| |||||    
T  2325940 cgtaaaaagagtaaatcatttgaataaa-acttttacgtgatggaaacatggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagcca 2326036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University