View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9015_low_13 (Length: 457)
Name: NF9015_low_13
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9015_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 5 - 440
Target Start/End: Complemental strand, 43616065 - 43615622
Alignment:
| Q |
5 |
ttaaatgaaagagataagagagaacgagatgttgaaaaactaaagataaacatcattattcaaaattcaatgtgttttaggagcacaatgcatagtataa |
104 |
Q |
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| T |
43616065 |
ttaaatgaaagagataagagagaacgagatgttgaaaaactaaagataaacatcattattcaaaaatcaatgtgttttaggagcacaatgcatagtataa |
43615966 |
T |
|
| Q |
105 |
agaaacaatagtactagtagcattcttggaagaatacctaatgcagtgagagccatgtgac------acatacagaatcaaaggcttagccttgccatga |
198 |
Q |
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| T |
43615965 |
agaaacaatagtactagtagcattcttggaagaatacctaatacagtgagagccatgtgactgatgcacatacagaatcaaaagcttagccttgccatga |
43615866 |
T |
|
| Q |
199 |
ccaaaagactattatgactgaaagtgctccttgggttttgagagatagtattctttacaatatttggccgcccc-aatgagtctcaaatgtagccgaata |
297 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43615865 |
ccaaaagactattatgagtgaaagtgctccttgggttttgagagatagtattctttacaatatttggccgcccccaatgagtctcaaatgtagccgaatg |
43615766 |
T |
|
| Q |
298 |
-tttatattttgggtttcgttaatcaatgcccttaaaaaattcaatactaaaaactttgttttataaatataatttttcacttttatgttagcaaattta |
396 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43615765 |
gtttatattttgggtttcgttaatcaatgcctttaagaaattcattagtaaaaattttgttttataaatataatttttcacttttatgttagtaaattta |
43615666 |
T |
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| Q |
397 |
cttattttaacactttaatcaatatcttaatgatactcgttagc |
440 |
Q |
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| T |
43615665 |
cttattttaacactttaattaatatcttaatgatactcgttagc |
43615622 |
T |
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